PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn002521 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | ERF | ||||||||
Protein Properties | Length: 208aa MW: 21792.7 Da PI: 8.04 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57 | 4.7e-18 | 55 | 103 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +++g+Wv+eIr+p++ +kr++lg++ t+e+Aa+a++aa+++l+g Achn002521 55 LYRGIR--SRSGKWVSEIREPRK---TKRVWLGTYPTPEMAAAAYDAAALALKG 103 69***6..678*********843...5***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.1E-11 | 54 | 103 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.13E-15 | 54 | 111 | No hit | No description |
SuperFamily | SSF54171 | 2.75E-18 | 55 | 111 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.56 | 55 | 111 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-26 | 55 | 111 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-28 | 55 | 119 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MNKKVPVPGT IDRGDPHAQR TIAPTDTQSR KPLYKREKTM SGCGAGRQAT GKHPLYRGIR 60 SRSGKWVSEI REPRKTKRVW LGTYPTPEMA AAAYDAAALA LKGGDAVLNF PSCVGSYPVP 120 PSTSPADVRA AAAVAAAMMA EGGAGSGAME GGPVGGNEFV DEEALFDLPN LLVDMAGGMM 180 MSPPRIESLP SDDSPGNCDG DRLWSYV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-14 | 49 | 116 | 1 | 68 | ATERF1 |
3gcc_A | 3e-14 | 49 | 116 | 1 | 68 | ATERF1 |
5wx9_A | 4e-14 | 46 | 112 | 5 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 31 | 38 | PLYKREKT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011033804.1 | 9e-70 | PREDICTED: ethylene-responsive transcription factor ERF026-like | ||||
Swissprot | Q9FJ90 | 1e-49 | ERF25_ARATH; Ethylene-responsive transcription factor ERF025 | ||||
TrEMBL | A0A2R6QK53 | 1e-116 | A0A2R6QK53_ACTCH; Ethylene-responsive transcription factor | ||||
STRING | POPTR_0003s12120.1 | 9e-69 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA553 | 22 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 5e-40 | ERF family protein |
Publications ? help Back to Top | |||
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