PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn002491
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 623aa    MW: 69187.3 Da    PI: 5.7684
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn002491genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS421.76.2e-1292406061373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lL++c+ea+ s++ + +++++a+l  lasp+g+p+ Rl+ayf+eAL+ r+++ +++++++  p+e + +  ++  +al+l+++vsPi+kf h+t N
  Achn002491 240 LISLLMACVEAIGSKNIAGINHFVAKLGGLASPRGSPIARLTAYFVEALSVRVSKIWPQIFHISVPRELD-RVDDDGGTALRLLNQVSPIPKFIHFTSN 337
                 5799***********************************************************9999998.5677788999****************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 + +l+a+eg+ervHiiDfd++qGlQWp+L+q+LasR+++p ++RiTgvg+    sk+ l etg+rLa fAe+l++pfef++ v++rled++l++L+vk+
  Achn002491 338 EVLLRAFEGKERVHIIDFDVKQGLQWPSLFQSLASRANPPTHVRITGVGE----SKRDLIETGDRLAGFAESLNLPFEFHP-VVDRLEDVRLWMLHVKE 431
                 **************************************************....9**************************.7**************** PP

        GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297
                 +E++aVn+v+qlh+ll +    +  ++++L l++s++P vv + eqea+hn+  F +r++++l+yysa+fds+++ lp es  rik+E++ +grei+nv
  Achn002491 432 RETVAVNCVFQLHKLLYDGSGGA--IKDFLGLIRSTNPGVVLMGEQEAEHNDLIFEARVSNSLKYYSAIFDSVDSVLPMESPVRIKIEEM-FGREIRNV 527
                 ****************6655444..489**************************************************************.******** PP

        GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaW 373
                 +aceg++r+erhe+++kWr+ +e+ GFk   ++e++  q ++ll++++ + ++ve    ++++l+l W d+pL++vSaW
  Achn002491 528 IACEGSDRIERHERFAKWRKLMEQGGFKCTGIGERELIQSRMLLKMFDCENFSVEklgRDEEALTLSWLDQPLYTVSAW 606
                 ************************************************999****6656699999************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.372214584IPR005202Transcription factor GRAS
PfamPF035142.1E-126240606IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MLAGCSPSTL LSPRHRMSTQ RLDLPCSFAR KDASRSQSIR PVGISVDKPS FESKTSTCSL  60
KQTSIKGEFW EKGKSLKRFA EQGCFGDDAS FMSRAKRKRS NGKPDDSVKI GQDLSLGQLG  120
SGNFWFQSNF TNLNIPQVPF SLSCSGDEER ACFVPSELIS PPLPPRNTQI TELGDKEVET  180
SHRPVQACSG SSTSSESHSL DLRLHENPLG QEIGNGSGLH NPIEEAEEDD NHDLDDDFEL  240
ISLLMACVEA IGSKNIAGIN HFVAKLGGLA SPRGSPIARL TAYFVEALSV RVSKIWPQIF  300
HISVPRELDR VDDDGGTALR LLNQVSPIPK FIHFTSNEVL LRAFEGKERV HIIDFDVKQG  360
LQWPSLFQSL ASRANPPTHV RITGVGESKR DLIETGDRLA GFAESLNLPF EFHPVVDRLE  420
DVRLWMLHVK ERETVAVNCV FQLHKLLYDG SGGAIKDFLG LIRSTNPGVV LMGEQEAEHN  480
DLIFEARVSN SLKYYSAIFD SVDSVLPMES PVRIKIEEMF GREIRNVIAC EGSDRIERHE  540
RFAKWRKLME QGGFKCTGIG ERELIQSRML LKMFDCENFS VEKLGRDEEA LTLSWLDQPL  600
YTVSAWAPVD VGGCSSSYSQ PS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-6824760825379Protein SCARECROW
5b3h_D4e-6824760825379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017972132.10.0PREDICTED: scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A2R6QK610.0A0A2R6QK61_ACTCH; Scarecrow-like protein
STRINGEOY246320.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55682434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein