PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn001581
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 251aa    MW: 28303.8 Da    PI: 6.3402
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn001581genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.86.6e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l++ +   G  +W+++++  g+ R++k+c++rw +yl
       Achn001581 14 KGPWTAEEDKKLINFILNNGQCCWRAVPKLAGLCRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding521.7e-1670111447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       T+ E+ l +d++++lG++ W++Ia++++ gRt++++k++w+++
       Achn001581  70 LTEAEERLVIDLHARLGNR-WSKIASRLP-GRTDNEIKNHWNTH 111
                      699****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.1E-21563IPR009057Homeodomain-like
PROSITE profilePS5129414.238961IPR017930Myb domain
SuperFamilySSF466895.62E-2711108IPR009057Homeodomain-like
SMARTSM007171.4E-101363IPR001005SANT/Myb domain
PfamPF002499.5E-141461IPR001005SANT/Myb domain
CDDcd001671.46E-81661No hitNo description
PROSITE profilePS5129427.40462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2464116IPR009057Homeodomain-like
SMARTSM007172.4E-1566114IPR001005SANT/Myb domain
PfamPF002498.9E-1569111IPR001005SANT/Myb domain
CDDcd001678.05E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MGRQPCCDKL GVKKGPWTAE EDKKLINFIL NNGQCCWRAV PKLAGLCRCG KSCRLRWTNY  60
LRPDLKRGLL TEAEERLVID LHARLGNRWS KIASRLPGRT DNEIKNHWNT HIKKKLLKMG  120
IDPVTHEPLN KEAKATETTS HADHLQLQEP NDNNIRSSEK SSSSPSDHHN FSSDESNFLG  180
IGDDQLTSCL WGVETPQLVD PSWEFPGLWD EDFAGLLHCQ DFGIQDFGID CFNDVEVMNS  240
LNTLGSDHNL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021275674.11e-120protein ODORANT1-like
SwissprotQ50EX61e-100ODO1_PETHY; Protein ODORANT1
TrEMBLA0A2R6QK220.0A0A2R6QK22_ACTCH; Uncharacterized protein
STRINGEOY244591e-118(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12350.13e-90myb domain protein 42
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]