PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn000371
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 265aa    MW: 29560.1 Da    PI: 5.1611
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn000371genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY31.73.1e-10128150123
                 ---SS-EEEEEEE--TT-SS-EE CS
        WRKY   1 ldDgynWrKYGqKevkgsefprs 23 
                 ldDgy+WrKYGqK+vk++++p s
  Achn000371 128 LDDGYKWRKYGQKVVKNTQHPSS 150
                 59******************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-12113150IPR003657WRKY domain
SuperFamilySSF1182905.36E-9120149IPR003657WRKY domain
PROSITE profilePS5081112.335123150IPR003657WRKY domain
SMARTSM007744.7E-4128158IPR003657WRKY domain
PfamPF031061.9E-6129150IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MWGLEEKYEK TELIKQEWKD SPTSNNPIEI LLPSKQISRS DHQDHIINIS HLGSGPQLSL  60
HRSSTANLWE WGEVNEECVM MNNKRMRMRS GGGDLGVSAM KMKKMKASRR KVREPRFCFK  120
TMSEVDILDD GYKWRKYGQK VVKNTQHPSS DSEVVDDLEF PEVAPATKDL IEHSFNLGGS  180
SGSSSEEVDM APRIRALGKK AGFNEDEYMN QPTNKEVVAA VKLSGGREDA DVDVRHGNEL  240
GGGKVEEVVR AEGVGGDEEN PLEE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18388KRMRMR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4403265e-32AM440326.2 Vitis vinifera contig VV78X084437.6, whole genome shotgun sequence.
GenBankJQ6921085e-32JQ692108.1 Vitis amurensis cultivar Zuoyouhong WRKY13 transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6RDP97e-91A0A2R6RDP9_ACTCH; WRKY transcription factor 13
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.15e-19WRKY DNA-binding protein 13