PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA9G00126 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | G2-like | ||||||||
Protein Properties | Length: 176aa MW: 20178.1 Da PI: 9.9391 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 88.6 | 5.7e-28 | 128 | 176 | 2 | 50 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHL 50 pr+rWt++LH+rFv+ave LGG+e+AtPk+ilelm+vk+Ltl+hvkSHL AA9G00126 128 PRMRWTTTLHSRFVHAVELLGGHERATPKSILELMDVKDLTLAHVKSHL 176 9***********************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.06E-13 | 125 | 176 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.0E-24 | 126 | 176 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.2E-20 | 128 | 176 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.2E-6 | 129 | 175 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MELFPPQPDL SLQISPPSTI DEEKELKLGF WRRGFDSKTS SLISKPNNSN SFDLISLSSN 60 NCNSHQLQQQ YLDGFFPHDL SYLRPISRTT LYHNDLLDSS SSSLCLKPKP NYKTLKSRFP 120 VKRSMRAPRM RWTTTLHSRF VHAVELLGGH ERATPKSILE LMDVKDLTLA HVKSHL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-14 | 128 | 176 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-14 | 128 | 176 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-14 | 128 | 176 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-14 | 128 | 176 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-14 | 128 | 176 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-14 | 128 | 176 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-14 | 128 | 176 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-14 | 128 | 176 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA9G00126 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493491 | 6e-46 | AB493491.1 Arabidopsis thaliana At1g32240 mRNA for hypothetical protein, partial cds, clone: RAAt1g32240. | |||
GenBank | AY048689 | 6e-46 | AY048689.1 Arabidopsis thaliana GARP-like putative transcription factor KANADI2 (KAN2) mRNA, complete cds. | |||
GenBank | BT029211 | 6e-46 | BT029211.1 Arabidopsis thaliana At1g32240 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006361268.1 | 6e-52 | PREDICTED: probable transcription factor KAN2 isoform X1 | ||||
Refseq | XP_006361269.1 | 5e-52 | PREDICTED: probable transcription factor KAN2 isoform X2 | ||||
Refseq | XP_009114900.1 | 6e-52 | PREDICTED: probable transcription factor KAN2 isoform X1 | ||||
Refseq | XP_013731603.1 | 6e-52 | probable transcription factor KAN2 isoform X2 | ||||
Refseq | XP_022546636.1 | 6e-52 | probable transcription factor KAN2 isoform X1 | ||||
Swissprot | Q9C616 | 3e-49 | KAN2_ARATH; Probable transcription factor KAN2 | ||||
TrEMBL | M1BKY0 | 1e-50 | M1BKY0_SOLTU; Uncharacterized protein | ||||
TrEMBL | M1BKY1 | 1e-50 | M1BKY1_SOLTU; Uncharacterized protein | ||||
TrEMBL | M4E3A3 | 1e-50 | M4E3A3_BRARP; Uncharacterized protein | ||||
STRING | Bra023254.1-P | 2e-51 | (Brassica rapa) | ||||
STRING | PGSC0003DMT400047532 | 2e-51 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5387 | 28 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17695.1 | 1e-35 | G2-like family protein |
Publications ? help Back to Top | |||
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