PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA9G00085 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | LBD | ||||||||
Protein Properties | Length: 180aa MW: 19594.2 Da PI: 7.4672 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 143.8 | 5.1e-45 | 14 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvhk+FGasnv k+l++l+ ++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+a+la++++e AA9G00085 14 PCAACKLLRRRCAHDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELEIQQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDILQAQLAVAQAE 113 7**********************************************************************************************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.426 | 13 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-44 | 14 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MKEGGNRKQG AASPCAACKL LRRRCAHDCV FAPYFPADEP QKFANVHKVF GASNVNKMLQ 60 ELEIQQRGDA VSSMVYEANA RVRDPVYGCV GAISSLQQQI DILQAQLAVA QAEVVHLRVR 120 HSTNLSSHGL VSPDSSNSGG SGSGSPLSKQ VIRPEDYNRV MFEHMDMVDQ ASLGESMWSC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-49 | 10 | 115 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-49 | 10 | 115 | 7 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA9G00085 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018486923.1 | 3e-92 | PREDICTED: LOB domain-containing protein 4 | ||||
Swissprot | Q9SHE9 | 2e-85 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A078INQ1 | 5e-90 | A0A078INQ1_BRANA; BnaCnng19520D protein | ||||
TrEMBL | A0A0D3D5L9 | 5e-90 | A0A0D3D5L9_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6EJ49 | 5e-90 | A0A3P6EJ49_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g041000.1 | 9e-91 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM131 | 28 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 3e-77 | LOB domain-containing protein 4 |