PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA9G00078
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family NF-X1
Protein Properties Length: 1115aa    MW: 121910 Da    PI: 8.0686
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA9G00078genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X125.72.5e-08323340118
   zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                CG+H+C+k+CH GpC+pC
  AA9G00078 323 CGRHQCEKTCHVGPCDPC 340
                ****************** PP
2zf-NF-X123.21.5e-07445462118
   zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                CG H+C++ CH G+C pC
  AA9G00078 445 CGLHTCNEVCHAGDCSPC 462
                ****************** PP
3zf-NF-X118.64.1e-06541559119
   zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                CG+H+C++lCH G CppC 
  AA9G00078 541 CGQHSCESLCHSGHCPPCL 559
                ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578502.68E-5145215No hitNo description
PROSITE profilePS500169.027153214IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590156211IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.686156212IPR001841Zinc finger, RING-type
CDDcd060081.74E-5245306No hitNo description
SMARTSM004380.023268286IPR000967Zinc finger, NF-X1-type
PfamPF014228.3270285IPR000967Zinc finger, NF-X1-type
CDDcd060085.43E-12313361No hitNo description
PfamPF014222.8E-6323340IPR000967Zinc finger, NF-X1-type
SMARTSM004382.1E-5323342IPR000967Zinc finger, NF-X1-type
CDDcd060084.24E-9377422No hitNo description
PfamPF014221.3E-4387404IPR000967Zinc finger, NF-X1-type
SMARTSM004388.4E-5387406IPR000967Zinc finger, NF-X1-type
CDDcd060089.23E-13435482No hitNo description
PfamPF014222.8E-6445462IPR000967Zinc finger, NF-X1-type
SMARTSM004383.8E-5445464IPR000967Zinc finger, NF-X1-type
PfamPF0142218503514IPR000967Zinc finger, NF-X1-type
CDDcd060083.07E-9531583No hitNo description
PfamPF014229.9E-5541558IPR000967Zinc finger, NF-X1-type
SMARTSM004382.0E-4541560IPR000967Zinc finger, NF-X1-type
CDDcd060085.55E-6588635No hitNo description
PfamPF0142216598615IPR000967Zinc finger, NF-X1-type
SMARTSM004380.077598616IPR000967Zinc finger, NF-X1-type
PfamPF014223.3651666IPR000967Zinc finger, NF-X1-type
SMARTSM004382.5651671IPR000967Zinc finger, NF-X1-type
CDDcd060081.14E-4679728No hitNo description
PfamPF0142290683709IPR000967Zinc finger, NF-X1-type
SMARTSM004380.39690711IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3305.4E-4937980IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1115 aa     Download sequence    Send to blast
MSSQNRRDRS NRPRFTSQNA QQTWVPRGAS TPVVVVNEPT PPPLNTSVNS ESHYAAAAPR  60
PVNFRRQPNG SGRPPNNQHQ RSNVPGPHPP NRQRRNDGLA TLPDNRQRGD PRARISRAVN  120
PGKEAVKEKN TVVTDPNLPQ LVQEIQEKLM KGSIECMICY DMVRRSANIW SCSSCYSIFH  180
MNCIKRWARA PTSVDLLAEK NQGDNWRCPG CQSVQLSSSK EICYRCFCGK IKDPPSDPYL  240
TPHSCGEPCG KSLEKEFAVA GITEEDLCPH VCVLQCHPGP CPPCKAFAPP RSCPCGKKMI  300
TTRCSERRSV LICGQRCDKL LMCGRHQCEK TCHVGPCDPC YVLVNATCFC KKKVETVSCG  360
DMNVKGELKA EDGVYSCSLN CGKPLGCGNH FCREVCHPGP CGDCELLPSK VKTCYCGKTS  420
LEEQRRSCLD PIPSCSNICR KLLPCGLHTC NEVCHAGDCS PCLVHVSQKC RCGSTSRTVE  480
CHIATSETEK FVCAKPCGRK KNCGRHRCSE RCCPLFNPKN ALSGEWDPHF CQIPCGKRLR  540
CGQHSCESLC HSGHCPPCLE MIFTDLTCAC GRTSIPPPLP CGTPVPSCQL PCSISQPCGH  600
SATHGCHFGD CPPCSVPVEK KCIGGHVVLR NIPCGLKDIR CNKICGKTRR CGTHACARSC  660
HPEPCDSGCE SEAGLRVTCG QTCGAPRREC RHTCPALCHP STACPDQRCE FPVTITCSCG  720
RITATVPCDA GGNGSIFHPD SVYETSLLQK LPVPLQPVES SGKRIPLGQR KLSCDDECAK  780
LERKRVLQDA FDITPPNLDA LHFGENSTMT EIIADIYRRD PKWVLAVEER CKFLVLGKAR  840
GSTSALKLHV FCPMQKDKRD TVRLIAERWK LAVTNAGWEP KRFTVIHVTP KSKPPTRIIG  900
VRGVVSLGAP HAPSFDPLVD MDPGLVVCFL DLPREANISA LVLRFGGECE LVWLNDKNAL  960
AVFHDPTRAA TAMRRLEHGS IYQGAVIVQN GTQSPLINNA WGIPGREVNR GNPWKKAVIQ  1020
EIEIDDSWGA EDSTIGGSST EIQASAWRTA KDNTPIPPSA NRWSVLEPQK ASTSTVEPLA  1080
QTEGSTSSEA AGKQPVGGSG EEETEVVDDW EKVCD
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA9G00078
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001323075.10.0NF-X-like 1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A1P8AVY40.0A0A1P8AVY4_ARATH; NF-X-like 1
STRINGBostr.13671s0471.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59552647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1