PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA9G00047
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family NAC
Protein Properties Length: 307aa    MW: 35004.4 Da    PI: 8.7755
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA9G00047genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.35.2e-52151412128
        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelv 100
                 pGfrFhPtdeelv +yLk+k+ +k+l++ e ik+vdiyk++PwdLpk ++ +ekewyf+++rd+ky++++r+nr+t  g+Wkatg+d++++s   ++ +
  AA9G00047  15 LPGFRFHPTDEELVGFYLKRKILQKSLPF-ELIKKVDIYKYDPWDLPKLASMGEKEWYFYCPRDRKYRNSTRPNRVTGGGFWKATGTDRPIYSLdATKCI 113
                69**************************9.89***************8888899**************************************9856677* PP

        NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
                glkk+Lvfy+gra kg+ktdW+mhe+rl
  AA9G00047 114 GLKKSLVFYRGRAAKGVKTDWMMHEFRL 141
                **************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100555.98414183IPR003441NAC domain
SuperFamilySSF1019413.01E-5714183IPR003441NAC domain
PfamPF023659.4E-2616141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEEYNTIERF DDVVLPGFRF HPTDEELVGF YLKRKILQKS LPFELIKKVD IYKYDPWDLP  60
KLASMGEKEW YFYCPRDRKY RNSTRPNRVT GGGFWKATGT DRPIYSLDAT KCIGLKKSLV  120
FYRGRAAKGV KTDWMMHEFR LPSLSDSHHS SYHNFNNKKQ QHNNNIKEVP SSDSWAICRI  180
FKKINSVSSQ RSSVQQTWMC PGINIPLSNH YSSGVGTREN VMYSAEEESS GFTGAAAAYF  240
ASQMLGVPYG TVRNSGTGDP LLLNSNNEQS FFNNMVLTEE IPDVRSGFAV METTASEMST  300
TSFSTNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-521618617171Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00537DAPTransfer from AT5G39820Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA9G00047
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010435843.11e-162PREDICTED: putative NAC domain-containing protein 94
SwissprotQ9FIW51e-158NAC94_ARATH; Putative NAC domain-containing protein 94
TrEMBLD7MJH81e-159D7MJH8_ARALL; Predicted protein
TrEMBLR0F9M71e-159R0F9M7_9BRAS; Uncharacterized protein
STRINGXP_010435843.11e-161(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.11e-136NAC domain containing protein 94