PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA9G00037
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family Dof
Protein Properties Length: 449aa    MW: 49199.6 Da    PI: 6.0777
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA9G00037genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.14.6e-39122181261
     zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ 
  AA9G00037 122 PDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKNP 181
                7899*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-31118179IPR003851Zinc finger, Dof-type
PfamPF027018.8E-32124180IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.64126180IPR003851Zinc finger, Dof-type
PROSITE patternPS013610128164IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MSDPAIKLFG KTIPLPDLAV SPQELNKVPV LLPDPCIGND DDGIEGDDDG RKETKEGKAN  60
ECEEEQEEES LRHECNNVAA STTSGITEKT ETTKAGGAAK TDEESSQNDT SACSQEAKLK  120
KPDKILPCPR CNSMETKFCY YNNYNVNQPR HFCKKCQRYW TAGGTMRNVP VGAGRRKNKN  180
PASHFNRHVS LASAEAMHKA RSDVHHPNGP SLLTFGSDAV LCESMASGLN LAEKTLRGNE  240
SEALKITIPC DNNQNTNTNT NTNTSTCSNP LKEEVGATTT MSTMPKVPCF PGPPAWPYAW  300
NGVSWTVLPF YPPPPAYWSC PPGAWNSFTW LPQPNSPSGS GPNSPTLGKH SREENLGKSG  360
TTFEEIEPPG ERSLWVPKTL RIDDPEEAAK SSIWETLGIN KDIKEDTFRA FRSNKEKCNV  420
GEAKTPQRRP DLQANPAAFS RSANFHESS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The stability of CDF2 is controlled by 'GIGANTEA' and redundantly by ADO3, ADO2 and/or ADO1. {ECO:0000250, ECO:0000269|PubMed:19619493}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00046PBMTransfer from AT5G39660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA9G00037
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. Regulated at the protein level by ADO3 and GI pos-transcriptionally. {ECO:0000269|PubMed:19619493}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001318708.10.0cycling DOF factor 2
RefseqNP_568567.10.0cycling DOF factor 2
RefseqNP_851106.10.0cycling DOF factor 2
SwissprotQ93ZL50.0CDF2_ARATH; Cyclic dof factor 2
TrEMBLA0A178UGH80.0A0A178UGH8_ARATH; CDF2
STRINGBostr.10058s0036.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137951825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.21e-159cycling DOF factor 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]