PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA96G00142 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | MYB | ||||||||
Protein Properties | Length: 239aa MW: 27832.7 Da PI: 9.1035 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.7 | 6.2e-14 | 20 | 67 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l +v ++G g+W++ + g R +k+c++rw +yl AA96G00142 20 KGLWSPEEDEKLRSYVLKHGHGCWTSLPLQAGIERNGKSCRLRWVNYL 67 678*****************************66************97 PP | |||||||
2 | Myb_DNA-binding | 50.1 | 6.5e-16 | 73 | 118 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + ++T++E+ l+ ++ lG++ W+ I+++++ gRt++++k++w++yl AA96G00142 73 KSSFTKDEESTLLYLHSILGNK-WSQISQHLP-GRTDNEVKNYWHSYL 118 5689******************.*********.************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.477 | 15 | 67 | IPR017930 | Myb domain |
SMART | SM00717 | 4.3E-11 | 19 | 69 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.4E-28 | 19 | 114 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.6E-13 | 20 | 67 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-21 | 21 | 74 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.26E-8 | 23 | 67 | No hit | No description |
PROSITE profile | PS51294 | 24.611 | 68 | 122 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-15 | 72 | 120 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-14 | 73 | 118 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.39E-10 | 75 | 118 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-24 | 75 | 122 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MVYKVEKSNK KMKLKEKQRK GLWSPEEDEK LRSYVLKHGH GCWTSLPLQA GIERNGKSCR 60 LRWVNYLRPG LKKSSFTKDE ESTLLYLHSI LGNKWSQISQ HLPGRTDNEV KNYWHSYLKK 120 KITSKITNSQ SISEKCSITN VEKRINSQIS KFSPKIVFTE WLDSSLVMNQ SSQNSNYVQD 180 FGKETTKIPD PINLEINYME NIVQNTNLML DEGISEIEFC SSFSDSFLFD CLINEQQLM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-25 | 20 | 124 | 7 | 110 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA96G00142 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006404203.1 | 1e-101 | transcription factor LAF1 | ||||
TrEMBL | V4NHJ3 | 1e-100 | V4NHJ3_EUTSA; Uncharacterized protein | ||||
STRING | XP_006404203.1 | 1e-101 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48920.1 | 2e-80 | myb domain protein 45 |