PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA96G00100

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

C3H

Protein Properties

Length: 416aa MW: 47455.6 Da PI: 6.927

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA96G00100	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	40.3	5.1e-13	81	105	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + e C+f++rtG C+yG +C+F+H+ AA96G00100 81 GVEDCSFYMRTGKCNYGLTCRFNHP 105 689*********************8 PP
2	zf-CCCH	27.1	7.3e-09	144	163	7	26
SGGGGTS--TTTTT-SS-SS CS zf-CCCH 7 rffartGtCkyGdrCkFaHg 26 ++++rtG CkyG++C+F+H+ AA96G00100 144 QYYFRTGGCKYGENCNFNHS 163 59*****************7 PP
3	zf-CCCH	36.3	9.6e-12	193	216	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C +++++G Ck+G+ CkF+H+ AA96G00100 193 EIECYYYMQNGSCKFGSDCKFNHP 216 568********************9 PP
4	zf-CCCH	33	1e-10	363	387	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C ++ r+G+Ck+G+ C+F H+ AA96G00100 363 DQRVCTYYNRYGICKFGPACRFDHS 387 5789********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	5.0E-6	79	106	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.563	79	107	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.4E-10	81	105	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.31E-5	82	107	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.4E-4	85	104	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.5	136	164	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.638	141	165	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.1E-6	144	163	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.7E-5	145	163	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.7E-6	190	217	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.178	190	218	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.6E-9	193	216	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.67E-6	194	217	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.8E-4	196	215	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	20	307	334	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	9.469	307	335	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.418	361	389	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.9E-4	362	388	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.09E-5	363	390	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.1E-8	363	387	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.0E-4	365	388	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MSTFKGRTFD GFDQNPVSRS FSNDPSANFS VSELNEQFKN VGFDETVKLQ SNGGTDLRAV 60 ESNEEEEEEV KNENLYPVRD GVEDCSFYMR TGKCNYGLTC RFNHPIRSRI QIGRDNKVRE 120 KEEDVNNLNL MDCKCFSVCV LCLQYYFRTG GCKYGENCNF NHSNPKTYTT SLPKLTTSLP 180 KLNFLSLPIR PGEIECYYYM QNGSCKFGSD CKFNHPDPIS IGETNTPSFH GNGGSFGSYQ 240 GNSSSWSSPK HVDPNMFSQF RGVSSDWNGY QASVYPSSTY VVNNSSMETS FFSKYQHQMA 300 TEEFPERPDQ PEFSYYLKTG DCKFKFNCKY HHPKNRLPKQ PPFALNDKGL PLRPLFTCLN 360 SQDQRVCTYY NRYGICKFGP ACRFDHSNQQ TYSVISSKAM EPPQVSTNGN ESDGWN

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MSTFKGRTFD GFDQNPVSRS FSNDPSANFS VSELNEQFKN VGFDETVKLQ SNGGTDLRAV  60
ESNEEEEEEV KNENLYPVRD GVEDCSFYMR TGKCNYGLTC RFNHPIRSRI QIGRDNKVRE  120
KEEDVNNLNL MDCKCFSVCV LCLQYYFRTG GCKYGENCNF NHSNPKTYTT SLPKLTTSLP  180
KLNFLSLPIR PGEIECYYYM QNGSCKFGSD CKFNHPDPIS IGETNTPSFH GNGGSFGSYQ  240
GNSSSWSSPK HVDPNMFSQF RGVSSDWNGY QASVYPSSTY VVNNSSMETS FFSKYQHQMA  300
TEEFPERPDQ PEFSYYLKTG DCKFKFNCKY HHPKNRLPKQ PPFALNDKGL PLRPLFTCLN  360
SQDQRVCTYY NRYGICKFGP ACRFDHSNQQ TYSVISSKAM EPPQVSTNGN ESDGWN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA96G00100

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002875904.1	1e-173	zinc finger CCCH domain-containing protein 43 isoform X2
Swissprot	Q9STM4	1e-172	C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBL	D7LRW7	1e-172	D7LRW7_ARALL; Zinc finger (CCCH-type) family protein
STRING	scaffold_501792.1	1e-173	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4176	27	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-156	C3H family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]