PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA955G00002
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 329aa    MW: 35814.9 Da    PI: 4.6162
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA955G00002genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.62.1e-1595141252
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 
                  +  GVr++k +g+W+AeIr+p    ++ +r +lg+f t eeAaka+   +++
  AA955G00002  95 KPVGVRQRK-WGKWAAEIRHP----ISkTRTWLGTFETQEEAAKAYADKKLE 141
                  789*****9.**********7....246******************877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.53E-2094135No hitNo description
PfamPF008471.8E-995138IPR001471AP2/ERF domain
SMARTSM003809.4E-1695149IPR001471AP2/ERF domain
PROSITE profilePS5103217.55695158IPR001471AP2/ERF domain
PRINTSPR003671.6E-796107IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-1597142IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-2098140IPR001471AP2/ERF domain
PRINTSPR003671.6E-7118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MKSLKKTEDC HPKPQGIQSV RKVRIIVSDP YATDDSSSDE EIDIPKFPKV KRIVREIELP  60
LFPSPMASSE VLSQSSSQGS VKTPSTKTIP KLLKKPVGVR QRKWGKWAAE IRHPISKTRT  120
WLGTFETQEE AAKAYADKKL EFDALVTSGS SSVTGNHSPS SKSDGSSSEG SENSHCSRFT  180
PIVHDQDTSA SVLTCVNGDD LSKEETTPSA GCATGDSNKE EKTIGDSSKE VPFDLSLSDL  240
QIPDLGFLAD GPLAAVQNDR KLDYDRFLMD DPEHLLDDLF FLDGLDLSGF EDNGPVGLPD  300
FKFPDVQLDL GDSSFGFFSQ AAPLNIACP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA955G00002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0119152e-38AC011915.5 Arabidopsis thaliana chromosome 1 BAC T26J14 genomic sequence, complete sequence.
GenBankAY0597822e-38AY059782.1 Arabidopsis thaliana putative AP2 domain transcription factor (At1g68550) mRNA, complete cds.
GenBankAY0913032e-38AY091303.1 Arabidopsis thaliana putative AP2 domain transcription factor (At1g68550) mRNA, complete cds.
GenBankCP0026842e-38CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010551273.13e-94PREDICTED: ethylene-responsive transcription factor ERF118
SwissprotQ9CA272e-87EF118_ARATH; Ethylene-responsive transcription factor ERF118
TrEMBLV4KM747e-91V4KM74_EUTSA; Uncharacterized protein
STRINGBostr.26959s0035.1.p3e-96(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25372671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.27e-62ERF family protein
Publications ? help Back to Top
  1. Tran MK,Schultz CJ,Baumann U
    Conserved upstream open reading frames in higher plants.
    BMC Genomics, 2008. 9: p. 361
    [PMID:18667093]