PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA93G00265
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family G2-like
Protein Properties Length: 298aa    MW: 32583.3 Da    PI: 7.4671
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA93G00265genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.81.6e-30103156155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  AA93G00265 103 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMKLMSVDGLTRENVASHLQKYRL 156
                 59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.355100159IPR017930Myb domain
SuperFamilySSF466892.33E-20100160IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-30102161IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-24104156IPR006447Myb domain, plants
PfamPF002499.6E-8106155IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MREDESDWFS RWEKELPSPE ELIPLSQSLI TPDLALAFDI QNPNHGNRNF TQIHNQTTPP  60
LTPSQSQLPF PSSQANSSAE FAADSTDLGS GGPGDEQART LKRPRLVWTP QLHKRFVDAV  120
AHLGIKNAVP KTIMKLMSVD GLTRENVASH LQKYRLYLKR MQGLSSGAGG GGGGSDPATD  180
RLFASSPVPA HFLHPNQVQS SDLFIPSFVP MATFQQQQQI AAAAAANSHL QPPQFHHRQM  240
GIGQFGSGMM NGKFDQSFLG RQSQQSGHRM SNYVEDLESG NGNGGGRTVL TLFPTRDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A1e-32103159157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA93G00265
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006298091.11e-137transcription factor MYBC1
SwissprotO222101e-70MYBC1_ARATH; Transcription factor MYBC1
TrEMBLR0HMQ61e-135R0HMQ6_9BRAS; Uncharacterized protein
STRINGXP_006298091.11e-136(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15492791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.11e-116G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]