PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA93G00022
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family G2-like
Protein Properties Length: 243aa    MW: 27260.8 Da    PI: 9.4101
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA93G00022genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.22.5e-3092145155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 +prl+Wtp+LH+rFv+av +L G+++A+Pkti+++m+v+gLt+e+v+SHLQkYRl
  AA93G00022  92 RPRLVWTPQLHKRFVDAVGHL-GIKNAVPKTIMQMMSVDGLTRENVASHLQKYRL 145
                 59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.81E-2089149IPR009057Homeodomain-like
PROSITE profilePS512949.78389148IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-3091150IPR009057Homeodomain-like
TIGRFAMsTIGR015575.3E-2493145IPR006447Myb domain, plants
PfamPF002492.7E-795144IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MREDNRNWCM RWDEELPSPE ELIPISQTLI TPHLARAFQI GIPNHLGSNK NTEIFHQKLQ  60
SATINSDFGA DSTDLGSGSI GAGDEPARTL KRPRLVWTPQ LHKRFVDAVG HLGIKNAVPK  120
TIMQMMSVDG LTRENVASHL QKYRLYLRRM QGISNGNGNE ISRSNGQVVV VSDSATDRLF  180
ASSPVPAHFL NSEYFMPPLM PMKYQQERQE KYAHSTQQRQ FEFESGNGNG GRKILTLFPA  240
GNG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A9e-3292148157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA93G00022
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411362.11e-102transcription factor MYBC1
SwissprotO222103e-98MYBC1_ARATH; Transcription factor MYBC1
TrEMBLV4LQD71e-101V4LQD7_EUTSA; Uncharacterized protein
STRINGXP_006411362.11e-101(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15492791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40970.13e-97G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]