PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA93G00012 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | bHLH | ||||||||
Protein Properties | Length: 259aa MW: 29351 Da PI: 7.9796 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.9 | 2.7e-11 | 65 | 111 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+ErrRR+riNs +++Lr ll + K +Ka+ L k+ve +k+L AA93G00012 65 RNHKEAERRRRERINSHLNKLRNLLSCN-----SKTDKATLLAKVVERVKEL 111 58***********************997.....7*************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.843 | 62 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.45E-13 | 65 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.9E-9 | 65 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.2E-12 | 65 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.5E-10 | 68 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 5.80E-5 | 165 | 230 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 2.1E-6 | 165 | 229 | No hit | No description |
SuperFamily | SSF55021 | 2.44E-6 | 165 | 233 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009941 | Cellular Component | chloroplast envelope | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MRESSDQILY SFLTGNELSG AGEYNLTSNL QSLCGSSSSS STCYYYPPAM GEMSKSEDRT 60 LTALRNHKEA ERRRRERINS HLNKLRNLLS CNSKTDKATL LAKVVERVKE LKQQTLQISS 120 NSSDHHHHHH QTLIPSETDE ISVLHDFEDH NYNSNEGNNI IFKASLCCDD RSDLLQDLIK 180 ILESLNMKIL RAEIATLGGR TRSVLIVSAD KEVHGIESLH FLQNALKSLL ERSSKSLMER 240 SSSGERSKRR RALDHIIMV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 70 | 75 | ERRRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA93G00012 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013752021.1 | 1e-112 | transcription factor bHLH106-like | ||||
Refseq | XP_013752093.1 | 1e-112 | transcription factor bHLH106-like | ||||
Swissprot | O80674 | 1e-100 | BH106_ARATH; Transcription factor bHLH106 | ||||
TrEMBL | A0A1J3GMC5 | 1e-110 | A0A1J3GMC5_NOCCA; Uncharacterized protein | ||||
STRING | Bra004599.1-P | 1e-111 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3642 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41130.1 | 3e-90 | bHLH family protein |
Publications ? help Back to Top | |||
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