PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA91G00006

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

AP2

Protein Properties

Length: 307aa MW: 34611.8 Da PI: 9.8268

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA91G00006	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.3	7.8e-18	93	142	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta+ Aa+a+++a+ k++g AA91G00006 93 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAYAAARAYDRAAIKFRG 142 78*****************......55**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	9.81E-16	93	151	IPR016177	DNA-binding domain
Pfam	PF00847	1.6E-9	93	142	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	8.2E-17	94	150	IPR001471	AP2/ERF domain
SMART	SM00380	2.4E-30	94	156	IPR001471	AP2/ERF domain
CDD	cd00018	5.09E-12	94	152	No hit	No description
PROSITE profile	PS51032	17.78	94	150	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009658	Biological Process	chloroplast organization
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MSDLNLTIFS TFNHQDANNN NQEDNSTQSL NVKDRFIAFE ILKRDGEDTS PPPPLPSQAL 60 PAVESEWLNL SCLEKNKEKI VKKSRRGPRS RSSQYRGVTF YRRTGRWESH IWDCGKQVYL 120 GGFDTAYAAA RAYDRAAIKF RGLDADINFE VDDYRLDIEK MKNLNKVEFV QTLRRESASF 180 GRGSSKYKSL NALHKYTQFN THQNQFHLFQ TRAWDAAAIK RNGLVKGEGV MKFGTHIKEN 240 KDLELSLGMS SSSSSSSENI RLTTSNRSGI GFLGKQTSMY LPVAASSGFP FITMATSTSM 300 SSSCFDP

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Repressor of flowering. {ECO:0000250, ECO:0000269\|PubMed:14573523}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00075	ChIP-chip	Transfer from AT3G54990	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA91G00006

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by miR172 after photoperiod changement. {ECO:0000269\|PubMed:14573523}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010427236.1	1e-114	PREDICTED: AP2-like ethylene-responsive transcription factor SMZ
Swissprot	Q6PV68	1e-102	SMZ_ARATH; AP2-like ethylene-responsive transcription factor SMZ
TrEMBL	D7LUZ7	1e-108	D7LUZ7_ARALL; Uncharacterized protein
STRING	XP_010427236.1	1e-114	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10858	18	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54990.1	2e-98	AP2 family protein

Publications ? help Back to Top
Gras DE, et al. SMZ/SNZ and gibberellin signaling are required for nitrate-elicited delay of flowering time in Arabidopsis thaliana. J. Exp. Bot., 2018. 69(3): p. 619-631 [PMID:29309650]