PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA90G00078
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family GRAS
Protein Properties Length: 724aa    MW: 82092.3 Da    PI: 5.5718
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA90G00078genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS382.55.2e-1173487181373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lL+ cA+avs +d + a+++L +++e++sp g+ ++Rla+yf++ L+arla++++++y al++++ts    ++ l+a++++  v+P+ k++ + aN
  AA90G00078 348 LRTLLILCAQAVSVDDRRTANEMLRQIREHSSPLGNGTERLAHYFANSLEARLAGTGTQIYTALSSKKTS---AADMLKAYQTYISVCPFKKVAIIFAN 443
                 5789**************************************************************9999...9************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                 + I+  +++ + +HiiDf+is+G+QWpaL++ L+ R++gpp+lRiTg++ p+ g    e ++etg+rLa+++++ +vpfe+n+ +a+++e++++e+L++
  AA90G00078 444 HNIMCLTANVKSIHIIDFGISYGFQWPALIHRLSYRSGGPPKLRITGIELPQRGfrPGEGVQETGNRLARYCQRYNVPFEYNA-IAQKWETIKVEDLKI 541
                 ****************************************************99*9***************************.7************** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 k+g+ ++Vn+ ++ ++llde+v ++s+rd+vL+l+k+++P+v++ +    ++n++ F++rf eal +ysalfd+ +++l+re+e r + E+e+ grei+
  AA90G00078 542 KEGDFIVVNSLFRFKNLLDETVVINSPRDAVLNLIKKVKPNVFIPAILSGSYNAPFFVTRFKEALFHYSALFDMCDSNLAREDEMRLMFEKEFYGREIM 640
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                 nvvaceg+er+er e++++W++r+ +aGF++vpl+++++++ k+ +++ +++ + v+++s++l++gWk+r +++ S+W
  AA90G00078 641 NVVACEGTERVERPESYKQWQARVIRAGFRQVPLEKEVMQKLKMKVENGYDKNFDVDQNSNWLIQGWKGRIVYASSVW 718
                 **************************************************999************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.902322699IPR005202Transcription factor GRAS
PfamPF035141.8E-114348718IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MGSYSDGFPE SLDGFDFNIG SDFSISNNPL NLSNEFYIND QSFSNLTSWD PNPSPPQEPY  60
PQNTTEDSLS PSDDTDFSDS VLKYISQVLM EEDMEEKPCM FHDALALQAA EKSLYEALGE  120
KYPSKLLDSP DESCSISSTA TTTSFDSHWS HDTLETRPSW LHTPIPSNFV FQSTSKSSPQ  180
YKPISRSADS VSGLFSDHQL AIQFKKGVEE ANKFLPKSSN LLIDVDHYIP NSMLNDSNVA  240
VKMEKDRDEI EHSNRLTRKK SHWREDEDFV EERSNKQSAV YVEETELSEM FDKVLLCGSE  300
QPVCILHQKF PAESAKGETT TTSQIAQLNG GNRHGKKSSG NTKETVDLRT LLILCAQAVS  360
VDDRRTANEM LRQIREHSSP LGNGTERLAH YFANSLEARL AGTGTQIYTA LSSKKTSAAD  420
MLKAYQTYIS VCPFKKVAII FANHNIMCLT ANVKSIHIID FGISYGFQWP ALIHRLSYRS  480
GGPPKLRITG IELPQRGFRP GEGVQETGNR LARYCQRYNV PFEYNAIAQK WETIKVEDLK  540
IKEGDFIVVN SLFRFKNLLD ETVVINSPRD AVLNLIKKVK PNVFIPAILS GSYNAPFFVT  600
RFKEALFHYS ALFDMCDSNL AREDEMRLMF EKEFYGREIM NVVACEGTER VERPESYKQW  660
QARVIRAGFR QVPLEKEVMQ KLKMKVENGY DKNFDVDQNS NWLIQGWKGR IVYASSVWVL  720
DSGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-5035571825377Protein SCARECROW
5b3h_D3e-5035571825377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA90G00078
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006417795.10.0scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLE4MWR10.0E4MWR1_EUTHA; mRNA, clone: RTFL01-12-F16
STRINGXP_006417795.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]