PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA8G00350
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family AP2
Protein Properties Length: 554aa    MW: 60960.8 Da    PI: 7.9014
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA8G00350genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.16e-15224273155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s+++GV++++++grW+++I+d      + k+++lg f+ta  Aa+ +++a+ k++g
  AA8G00350 224 SQFRGVTFYRRTGRWESHIWD------SgKQVYLGGFDTAHAAARVYDRAAVKFRG 273
                789******************......44**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-15224283IPR016177DNA-binding domain
CDDcd000181.17E-22224283No hitNo description
PfamPF008475.5E-7225273IPR001471AP2/ERF domain
SMARTSM003805.9E-30225287IPR001471AP2/ERF domain
PROSITE profilePS5103216.924225281IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-15225281IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MNKLVICFPF YGVFSMPLAT VYGSSTLQYS SGVDIFLAEL LAEHLSSVIS YFSFVIEHSL  60
VAAQRNESPD LFIDFRSLSI GSLEYELGSL LVLNRKAIVN FIGRLSVDLM DEPVTSNSSV  120
INADASSCID GEDSCSTPAV KFQFEILKGR CGEEDRDVVM TMEFFPVAEG DGNGMKYLDS  180
SAQSSKNFVD ICFGGGTGGN DAQVMQPPSQ PVKKSRRGPR SKSSQFRGVT FYRRTGRWES  240
HIWDSGKQVY LGGFDTAHAA ARVYDRAAVK FRGVEADINF NISDYEEDVK QLANLTKEEV  300
VQVLRRQGTA FSRSNSKYQG IALQKFGGWG AQMQQFHGNM GCDKAAIKWH GREGTLIEPH  360
ASRMVPEAAH VKLDLNLGIS LSLGDGPKQK DGSLRLHHGP NGIVCGRNYK SQIESHMAAA  420
PCDPPFNFLK RGPDHLINRH ILPSAFFSSK FNSSLQEIKP DKGLMSHSPR SFRTWQAQDH  480
PNGGTSATAT PSLLLSNAAS SRFSLPPMRP PSSITSLHLS QPFNLNLPGL HFTHPSDTTS  540
HHHHHPMNRP EAPP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00616PBMTransfer from AT5G60120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA8G00350
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400879.10.0AP2-like ethylene-responsive transcription factor TOE2
SwissprotQ9LVG20.0TOE2_ARATH; AP2-like ethylene-responsive transcription factor TOE2
TrEMBLE4MWP90.0E4MWP9_EUTHA; mRNA, clone: RTFL01-19-B14
TrEMBLV4LIS40.0V4LIS4_EUTSA; Uncharacterized protein
STRINGXP_006400879.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128361730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60120.10.0target of early activation tagged (EAT) 2