PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA8G00332 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 265aa MW: 30893.3 Da PI: 9.6752 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 29.4 | 1e-09 | 17 | 38 | 4 | 25 |
-SHHHHHHHHHHHHHHHHHHHH CS SRF-TF 4 enksnrqvtfskRrngilKKAe 25 +n+sn qvtfskRr g++KKA+ AA8G00332 17 QNESNLQVTFSKRRSGLFKKAS 38 79*******************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 14.591 | 6 | 39 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.9E-9 | 6 | 47 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.97E-14 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-7 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.1E-9 | 16 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-7 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MVRKSKGRQK IEMVKMQNES NLQVTFSKRR SGLFKKASQK VYSFGHPNVE NVVDRFLNIN 60 PIPQHQCNNI NVQLPHNEAQ QNSIVQHLND HLTKVGNQLE GEKKKNENLK QIRNNNKNSE 120 FWWEKPVEEL DLNQVNHLKS TLETLKNKVR VEASKLLQNT VNVPHQNFYV GSSSNGGFRH 180 GSDLELFNQN RMMTTNANAN ANAFGYNHNM IGPSGNVNED YVRDYNMRYR FDYEQEQNRQ 240 NQGLKQENVS EYEQNSHIPF GHGYY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA8G00332 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002864686.1 | 3e-78 | agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 4e-75 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | D7MTU5 | 7e-77 | D7MTU5_ARALL; MADS-box protein | ||||
STRING | fgenesh1_pg.C_scaffold_8002041 | 1e-77 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-67 | AGAMOUS-like 62 |
Publications ? help Back to Top | |||
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