PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA8G00264 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | NAC | ||||||||
Protein Properties | Length: 243aa MW: 27519.9 Da PI: 6.5201 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 137.9 | 6.3e-43 | 5 | 135 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lp GfrF Pt++el+++yL++++eg + ++++vi+ +d+++++P +Lp+ +++++ ++w+fF++r++++a+g r++r+t sgyWkatg+ +v+s++ AA8G00264 5 LPIGFRFFPTEDELISFYLRNQLEGGNDPMHRVIPVLDVFDLHPTQLPHvageRCRGDAEQWFFFVPRQEREARGGRPSRTTGSGYWKATGSPGPVFSAD 104 699***************************99****************546666666888**************************************** PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyr 127 ++ +g+kkt+vfy+g+ap+g+kt+W m+ey+ AA8G00264 105 NRIIGIKKTMVFYTGKAPTGRKTKWKMNEYK 135 ******************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-48 | 4 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 47.72 | 5 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-22 | 6 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MSDELPIGFR FFPTEDELIS FYLRNQLEGG NDPMHRVIPV LDVFDLHPTQ LPHVAGERCR 60 GDAEQWFFFV PRQEREARGG RPSRTTGSGY WKATGSPGPV FSADNRIIGI KKTMVFYTGK 120 APTGRKTKWK MNEYKAIDET VHVSTIPKLR HEFSLCRVYI TSGSSRAFDR RPVDNFQTDQ 180 RMVTSDGAGT SSTPATIVTA ERTTTSSPET SISGEENVHV SANVEMVDNL PLYIWEWEQL 240 NWP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-32 | 5 | 166 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-32 | 5 | 166 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-32 | 5 | 166 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-32 | 5 | 166 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-32 | 5 | 166 | 20 | 173 | NAC domain-containing protein 19 |
3swm_B | 6e-32 | 5 | 166 | 20 | 173 | NAC domain-containing protein 19 |
3swm_C | 6e-32 | 5 | 166 | 20 | 173 | NAC domain-containing protein 19 |
3swm_D | 6e-32 | 5 | 166 | 20 | 173 | NAC domain-containing protein 19 |
3swp_A | 6e-32 | 5 | 166 | 20 | 173 | NAC domain-containing protein 19 |
3swp_B | 6e-32 | 5 | 166 | 20 | 173 | NAC domain-containing protein 19 |
3swp_C | 6e-32 | 5 | 166 | 20 | 173 | NAC domain-containing protein 19 |
3swp_D | 6e-32 | 5 | 166 | 20 | 173 | NAC domain-containing protein 19 |
4dul_A | 6e-32 | 5 | 166 | 17 | 170 | NAC domain-containing protein 19 |
4dul_B | 6e-32 | 5 | 166 | 17 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA8G00264 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018471145.1 | 1e-133 | PREDICTED: NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 1e-125 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | V4KW25 | 1e-131 | V4KW25_EUTSA; Uncharacterized protein | ||||
STRING | XP_006400742.1 | 1e-132 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1445 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 1e-116 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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