PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA8G00095
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family GATA
Protein Properties Length: 337aa    MW: 36829 Da    PI: 6.3672
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA8G00095genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.15.8e-19249283135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  AA8G00095 249 CSHCGVQKTPQWRAGPLGAKTLCNACGVRFKSGRL 283
                *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.9E-1005337IPR016679Transcription factor, GATA, plant
SMARTSM004012.1E-15243297IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.49243279IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-14244305No hitNo description
Gene3DG3DSA:3.30.50.102.0E-14247281IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.39E-14248296No hitNo description
PfamPF003208.2E-17249283IPR000679Zinc finger, GATA-type
PROSITE patternPS003440249274IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MERVEAVALK SSIRKEMALK MTPPVFDDFL AVTSSAQNNG VSSEDFSVDD LLDLSNDDVF  60
VQDEDETQPK LQQQEILCLS SETRRSNDFS GGCDDFGSLP TSELSVPTDD LANLEWLSHF  120
VEESFTEYSA PNLTGAPTEK PAWLTGDRKQ PVTPVTEESC FKSPVPAKAR SKRTRNGVKV  180
WCLGSSSSST PSSSSSTSSS SSSGPSSPWF NGAELIEPVV SSEKPPVPNR QKKRLGDSVN  240
GGQQLTRRCS HCGVQKTPQW RAGPLGAKTL CNACGVRFKS GRLLPEYRPA CSPTFSSEIH  300
SNHHRKVMEM RRKKETPGEK ETGLNQLVQN PQAVPSF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA8G00095
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_201433.11e-153GATA transcription factor 5
RefseqNP_975002.11e-153GATA transcription factor 5
SwissprotQ9FH571e-154GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A178UHW11e-154A0A178UHW1_ARATH; GATA transcription factor
STRINGBostr.0568s0044.1.p1e-155(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36982561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-137GATA transcription factor 5