PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA8G00027
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family Nin-like
Protein Properties Length: 184aa    MW: 21770.2 Da    PI: 10.3909
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA8G00027genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK86.91.7e-2768117352
     RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                k i+ e++s+yFs+pi++AAkeL+++lT+LK++CR++GI+RWPhRk+ sl
  AA8G00027  68 KCITREEISQYFSMPITKAAKELNIGLTLLKKKCRELGIPRWPHRKLMSL 117
                789********************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151918.38348139IPR003035RWP-RK domain
PfamPF020424.3E-2370117IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MSGFWNEINR YNNAETKPNI DETTLQTHNT QNQDLELKIS KDNNTKKEET LIKKRTKVKI  60
ESYNSSSKCI TREEISQYFS MPITKAAKEL NIGLTLLKKK CRELGIPRWP HRKLMSLQTL  120
ITNIKELGKV EGEMGESKVR NAVEILEREK QKIEEIPDLE FEDKTKRLRQ ACFKAKYKRR  180
RRRL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177182KRRRRR
2177183KRRRRRL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA8G00027
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024006783.12e-59protein RKD3
SwissprotQ9FGD13e-59RKD3_ARATH; Protein RKD3
TrEMBLV4K0314e-58V4K031_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006393899.16e-59(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39662356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66990.11e-61RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H
    RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis.
    New Phytol., 2017. 213(4): p. 1909-1924
    [PMID:27870062]