PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA8G00027 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | Nin-like | ||||||||
Protein Properties | Length: 184aa MW: 21770.2 Da PI: 10.3909 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 86.9 | 1.7e-27 | 68 | 117 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k i+ e++s+yFs+pi++AAkeL+++lT+LK++CR++GI+RWPhRk+ sl AA8G00027 68 KCITREEISQYFSMPITKAAKELNIGLTLLKKKCRELGIPRWPHRKLMSL 117 789********************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 18.383 | 48 | 139 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 4.3E-23 | 70 | 117 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MSGFWNEINR YNNAETKPNI DETTLQTHNT QNQDLELKIS KDNNTKKEET LIKKRTKVKI 60 ESYNSSSKCI TREEISQYFS MPITKAAKEL NIGLTLLKKK CRELGIPRWP HRKLMSLQTL 120 ITNIKELGKV EGEMGESKVR NAVEILEREK QKIEEIPDLE FEDKTKRLRQ ACFKAKYKRR 180 RRRL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 177 | 182 | KRRRRR |
2 | 177 | 183 | KRRRRRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA8G00027 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024006783.1 | 2e-59 | protein RKD3 | ||||
Swissprot | Q9FGD1 | 3e-59 | RKD3_ARATH; Protein RKD3 | ||||
TrEMBL | V4K031 | 4e-58 | V4K031_EUTSA; Uncharacterized protein (Fragment) | ||||
STRING | XP_006393899.1 | 6e-59 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3966 | 23 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66990.1 | 1e-61 | RWP-RK domain-containing protein |
Publications ? help Back to Top | |||
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