PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA8G00012
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family AP2
Protein Properties Length: 226aa    MW: 24906.6 Da    PI: 6.8938
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA8G00012genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.54e-1472119152
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 
                s+y+GV+ +k  grW+A++  +     +k+++lg f+t+ eAa+a+++a+ +
  AA8G00012  72 SKYRGVTLHK-CGRWEARLGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIR 119
                89********.7******5553..1.26**********99*********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.9E-5243IPR001471AP2/ERF domain
PROSITE profilePS510328.8871037IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-81037IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-51038IPR016177DNA-binding domain
SuperFamilySSF541717.19E-1772131IPR016177DNA-binding domain
PfamPF008471.6E-972119IPR001471AP2/ERF domain
CDDcd000187.31E-2572130No hitNo description
Gene3DG3DSA:3.30.730.101.7E-1673130IPR001471AP2/ERF domain
PROSITE profilePS5103215.63373130IPR001471AP2/ERF domain
SMARTSM003801.1E-2973136IPR001471AP2/ERF domain
PRINTSPR003674.2E-67485IPR001471AP2/ERF domain
PRINTSPR003674.2E-6112132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MQGLWKASGF DTAHAAARAY DRAAIKFRGV DADINFDIED YVQDVKQMGN LTKEEFMHVL  60
RRQSTGFPRG SSKYRGVTLH KCGRWEARLG QFLGKKYVYL GLFDTEIEAA RAYDKAAIRS  120
NGKDAVTNFD PKVYDEDLSP DKTLNDHNLD LSLGESTSDE IGTRSENPSG SNNKNGLLGS  180
DLSLTVGSEK QSDGSGRRPV MVTTAAASSG FSPHHYTPYT IHFSNP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). May regulate negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA8G00012
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393916.21e-106AP2-like ethylene-responsive transcription factor TOE3
SwissprotQ9FH955e-97TOE3_ARATH; AP2-like ethylene-responsive transcription factor TOE3
TrEMBLA0A078FIK11e-102A0A078FIK1_BRANA; BnaC07g16190D protein
TrEMBLA0A0D3D8831e-102A0A0D3D883_BRAOL; Uncharacterized protein
TrEMBLA0A3P6E0781e-102A0A3P6E078_BRAOL; Uncharacterized protein
STRINGBostr.0568s0140.1.p1e-103(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22972875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67180.12e-98target of early activation tagged (EAT) 3
Publications ? help Back to Top
  1. Zumajo-Cardona C,Pabón-Mora N
    Evolution of the APETALA2 Gene Lineage in Seed Plants.
    Mol. Biol. Evol., 2016. 33(7): p. 1818-32
    [PMID:27030733]