PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA89G00028

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

FAR1

Protein Properties

Length: 735aa MW: 83611.6 Da PI: 6.3452

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA89G00028	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.3	1.1e-22	124	207	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Yn+YA+++GF +r+++s ++++++ + ++C++eg++ ++ + ++r+etrtgC+a++++++ ++++w+v++++l+HnH++ AA89G00028 124 YYNSYARDLGFAIRVKSSWAKRNSKQKRGAVLCCNCEGFKMVKEAN-----SRRKETRTGCQAMIRLRLIESNRWKVDEVKLDHNHSFD 207 9*************************************998877.....8999*****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.7E-20	124	207	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.3E-26	331	425	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.124	614	653	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.6E-7	624	651	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.9E-6	628	655	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 735 aa Download sequence Send to blast
MIGDSVLVYS PTQHSPSPNP NLCITIEDES HGSAQLVVAN GDDLAIESPD LEIQENDIEL 60 QGNDLELDND CDALLEIGSS GNNHEDSRGD TFGTDGETLE SQGKFLLPPA TGMEFQSYDD 120 AYSYYNSYAR DLGFAIRVKS SWAKRNSKQK RGAVLCCNCE GFKMVKEANS RRKETRTGCQ 180 AMIRLRLIES NRWKVDEVKL DHNHSFDPER AQNSKSHKKT CGAAKKRNPE PLADVEVRTI 240 KLYRALTIDT LGHGTSNSSV EMMDRIHDHP HCSKRLEISG GFRVLQDFFF RVQLTNPNFV 300 YLMDLGEDGS LRNVFWIEPR ARVAYSHFGD VVVFDTTCLS KKYELPLVAF VGINHHGDSV 360 LLGCGLVADL SCETYVWLFR AWLTCMLGRP PQTFITEQCK AIQAAVSEVF PRAHHRLSLT 420 HVLHNIFQSV VGLQDSEMFR MTLNKVVYGS LKVEEFEVAW EEMIMRFGLA NHDTIRCLFQ 480 DREQWAPVYL KDTFLAGALT YQLGNVATPF VFNGYVQQHT SLREFFDGYL SFLDKKYRSE 540 ALCDSESSKS FPALKTTHPY ESQMAKVLTN EIFRRFQDEV LAMSSCFGVT QVHSNGLTFS 600 YVVKERDGDK VKDFEVIYEA TGAAEVRCFC VCAGFSFNGY LCRHVLLVLS HNGLEEVPSQ 660 YTLQRWRKDV KRVYASDFGP DRVDIMNPVQ WYEHLQRRAM QVVEEGMRSK EHCRVASQSF 720 KECRNKVNLV PDKNS

Sequence ? help Back to Top

Protein Sequence Length: 735 aa Download sequence Send to blast

MIGDSVLVYS PTQHSPSPNP NLCITIEDES HGSAQLVVAN GDDLAIESPD LEIQENDIEL  60
QGNDLELDND CDALLEIGSS GNNHEDSRGD TFGTDGETLE SQGKFLLPPA TGMEFQSYDD  120
AYSYYNSYAR DLGFAIRVKS SWAKRNSKQK RGAVLCCNCE GFKMVKEANS RRKETRTGCQ  180
AMIRLRLIES NRWKVDEVKL DHNHSFDPER AQNSKSHKKT CGAAKKRNPE PLADVEVRTI  240
KLYRALTIDT LGHGTSNSSV EMMDRIHDHP HCSKRLEISG GFRVLQDFFF RVQLTNPNFV  300
YLMDLGEDGS LRNVFWIEPR ARVAYSHFGD VVVFDTTCLS KKYELPLVAF VGINHHGDSV  360
LLGCGLVADL SCETYVWLFR AWLTCMLGRP PQTFITEQCK AIQAAVSEVF PRAHHRLSLT  420
HVLHNIFQSV VGLQDSEMFR MTLNKVVYGS LKVEEFEVAW EEMIMRFGLA NHDTIRCLFQ  480
DREQWAPVYL KDTFLAGALT YQLGNVATPF VFNGYVQQHT SLREFFDGYL SFLDKKYRSE  540
ALCDSESSKS FPALKTTHPY ESQMAKVLTN EIFRRFQDEV LAMSSCFGVT QVHSNGLTFS  600
YVVKERDGDK VKDFEVIYEA TGAAEVRCFC VCAGFSFNGY LCRHVLLVLS HNGLEEVPSQ  660
YTLQRWRKDV KRVYASDFGP DRVDIMNPVQ WYEHLQRRAM QVVEEGMRSK EHCRVASQSF  720
KECRNKVNLV PDKNS

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA89G00028

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006389743.1	0.0	protein FAR1-RELATED SEQUENCE 8
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	A0A087HJU8	0.0	A0A087HJU8_ARAAL; Uncharacterized protein
STRING	A0A087HJU8	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14233	20	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]