PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA89G00009
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HD-ZIP
Protein Properties Length: 764aa    MW: 85600.6 Da    PI: 6.5969
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA89G00009genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.95.3e-21103158156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 r+k +++t++q++ +e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  AA89G00009 103 RKKYHRHTTDQIRHMEALFKETPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 158
                 7999************************************************9877 PP
2START216.41e-672745032206
                 HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS..........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
       START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.........dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                 +a++a  el+k+a+++ep+W +s     e++n+de++++f+             +s+ea+r++gvv+m++ +l ++++d++ qW+e+++    ka+t++
  AA89G00009 274 IANRASLELQKMATSGEPLWLRSLesgrEILNYDEYVKEFPLPPPsssscfpgnKSIEASRDVGVVFMDAQKLAQSFMDVG-QWKEMFPclisKAATVD 371
                 6788999*********************************653337779********************************.***************** PP

                 EECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--S CS
       START  84 vissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkg 174
                 vi++g       ga+qlm+ e+q+l+p+v+ R+++f+R++rql+ ++w+i dvSvd+ +++  ++s+v+++++pSg++ie++snghskvtwveh +l++
  AA89G00009 372 VIRQGegpsrldGAIQLMFGEMQLLTPMVAtREVYFLRTCRQLSPDKWAIIDVSVDNVEENM-EASLVKCRKRPSGCIIEDTSNGHSKVTWVEHLELQK 469
                 *************************************************************9.8*********************************** PP

                 SXX..HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 175 rlp..hwllrslvksglaegaktwvatlqrqcek 206
                 ++   h+l+rslv+sgla+ga++wvatlq +ce+
  AA89G00009 470 STTtvHALFRSLVNSGLAFGARHWVATLQLHCER 503
                 98777***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-2188154IPR009057Homeodomain-like
SuperFamilySSF466891.71E-1993161IPR009057Homeodomain-like
PROSITE profilePS5007117.815100160IPR001356Homeobox domain
SMARTSM003899.6E-18102164IPR001356Homeobox domain
PfamPF000462.7E-18103158IPR001356Homeobox domain
CDDcd000862.28E-16107158No hitNo description
PROSITE patternPS000270135158IPR017970Homeobox, conserved site
PROSITE profilePS5084840.457264506IPR002913START domain
SuperFamilySSF559613.85E-32267503No hitNo description
CDDcd088752.56E-105268502No hitNo description
SMARTSM002343.0E-71273503IPR002913START domain
PfamPF018523.7E-58274503IPR002913START domain
Gene3DG3DSA:3.30.530.204.5E-7330502IPR023393START-like domain
SuperFamilySSF559611.35E-15532749No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 764 aa     Download sequence    Send to blast
MSMAVEMSSN PPTKDFFSSP ALSLSLAGIF RNASSASAGS RRVVEDDEDR TVEMSSENSG  60
PTRSRSRSDE DMEIMENMEM EGDEREEEEE EEDPTNSNKR KKRKKYHRHT TDQIRHMEAL  120
FKETPHPDEK QRQQLSKQLG LAPRQVKFWF QNRRTQIKAI QERHENSLLK AELEKVREEN  180
KAMRESFSKA SCPNCGVPNP TRDNIPEEHH LHLENSKLKA ELDRLRAALG RAPYPLQASS  240
STTGSCSDDQ DHRFTSLDFY TGIFALEKSR ISDIANRASL ELQKMATSGE PLWLRSLESG  300
REILNYDEYV KEFPLPPPSS SSCFPGNKSI EASRDVGVVF MDAQKLAQSF MDVGQWKEMF  360
PCLISKAATV DVIRQGEGPS RLDGAIQLMF GEMQLLTPMV ATREVYFLRT CRQLSPDKWA  420
IIDVSVDNVE ENMEASLVKC RKRPSGCIIE DTSNGHSKVT WVEHLELQKS TTTVHALFRS  480
LVNSGLAFGA RHWVATLQLH CERLVFYMAT NVPTKDSLGV TTLAGRKSVL KMAQRMTQNF  540
YRSIAASSYH QWTKITTKTG EDMRVSSRKN LHDPGEPTGV IVCASSSIWL PVTPSLLFDF  600
FRDEARRHEW DVLSNGAHVQ SIASLAKGQD RGNSVSIQVV KSREKSSWVL QDSCTNSYES  660
LVVYAPVDIN LTQLVIAGHD PSNIQILPCG FSIIPDGVES GPLVITSRQP DKNSQGGSLL  720
TLALQTLINP SPSAKLTMES VESATNLVSL TLHNIKRSLQ IEES
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198104KRKKRKK
2100104KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA89G00009
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_565223.10.0HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain-containing protein
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A178WBY60.0A0A178WBY6_ARATH; GL2
STRINGAT1G79840.20.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM123702731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]