PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA87G00380
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family G2-like
Protein Properties Length: 301aa    MW: 32920.1 Da    PI: 6.6264
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA87G00380genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.46.7e-333993155
     G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                kprlrWt eLHerFv++v+qLGG+++AtPkti+++m+vkgLtl+h+kSHLQk+Rl
  AA87G00380 39 KPRLRWTAELHERFVDVVTQLGGPDRATPKTIMRTMGVKGLTLYHLKSHLQKFRL 93
                79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.5143696IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-313695IPR009057Homeodomain-like
SuperFamilySSF466891.51E-163895IPR009057Homeodomain-like
TIGRFAMsTIGR015576.5E-233994IPR006447Myb domain, plants
PfamPF002491.9E-74191IPR001005SANT/Myb domain
PfamPF143795.2E-26137183IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0010628Biological Processpositive regulation of gene expression
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MYSAICSLPL DGSVGEYSRP LEGTNLPGDA CLVLTTDPKP RLRWTAELHE RFVDVVTQLG  60
GPDRATPKTI MRTMGVKGLT LYHLKSHLQK FRLGRQSCKE STENSKDASC VAESQDTSSS  120
STLSLRMAAQ EQKESYQVTE ALRAQMEVQR RLHEQLEVQK RLQLRIEAQG KYLHSILEKA  180
CKAIDEQAVA FTGLEVAREE ELSELAIKVS NGTQGTATSL LESFDTTKML LPSLSELGVA  240
IEHRNNNNNT NCSAESSLSS STVGSPVSGG LMKKRHRGVF GNGDSVTMDN ETGWVMPSSV  300
G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-193995157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-193995157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-193995157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-193995157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA87G00380
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006414869.11e-176protein PHR1-LIKE 3 isoform X2
SwissprotQ8LAJ71e-175PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBLE4MXI81e-174E4MXI8_EUTHA; mRNA, clone: RTFL01-27-H18
TrEMBLV4P9H31e-174V4P9H3_EUTSA; Uncharacterized protein
STRINGCagra.6748s0004.1.p1e-173(Capsella grandiflora)
STRINGXP_006414870.11e-173(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35152561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.11e-158G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]