PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA87G00341

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

HSF

Protein Properties

Length: 473aa MW: 53244 Da PI: 6.5216

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA87G00341	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	108.9	3.6e-34	26	116	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+ye+++d++++e++ wse +nsf+v+++ ef++ +Lp+yFkh+nf+SF+RQLn+YgF+k+++e+ weF ++ F k++k+ll++i+ AA87G00341 26 FLVKTYEMVDDSTTDEIVAWSEGKNSFIVWNPPEFSRLLLPTYFKHNNFSSFIRQLNTYGFRKIDSER---------WEFLNEDFIKDQKHLLKNIH 113 9**************************************************************999.........****************** PP XXX CS HSF_DNA-bind 99 rkk 101 r+k AA87G00341 114 RRK 116 *98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	1.05E-34	22	115	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	3.3E-58	22	115	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	8.0E-37	22	115	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	9.6E-19	26	49	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.8E-29	26	115	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.6E-19	64	76	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	65	89	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.6E-19	77	89	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence Send to blast
MNGALANSSA SGSGSGGEGG GGPAPFLVKT YEMVDDSTTD EIVAWSEGKN SFIVWNPPEF 60 SRLLLPTYFK HNNFSSFIRQ LNTYGFRKID SERWEFLNED FIKDQKHLLK NIHRRKPIHS 120 HSHPPASTID QERATLQDQM DKLSREKAAI EAKLVKFKQQ RSTAKLQLEE MTEHVDGMEK 180 RQEKLLNFLE KAVRNPSFIE QFSRKIEQLD MSAYNKKRRI PQVEQSKPPS ENSHLDNSSG 240 SSRPDSGNIL HPNFSNKLRL ELSPAVSDMN MVSHSIQSSN EEGTSPKGIQ SGSDPKTALT 300 RRESLLFAPE ALELADTGSC PRRLLLNDNT RAEPLQQRLT SSEDTDGSFS CHLNLTLASA 360 PLPDKTTPQI PKTTHKSQDG GRCTELNFNS IETTTSEKNW GRQEAAAGNQ THVAPPDRVN 420 DVFWEQFLTE RPGSSDNEEA SSTYRGNPYE EQEERRNGHM MSRNTKNIEQ LTL

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence Send to blast

MNGALANSSA SGSGSGGEGG GGPAPFLVKT YEMVDDSTTD EIVAWSEGKN SFIVWNPPEF  60
SRLLLPTYFK HNNFSSFIRQ LNTYGFRKID SERWEFLNED FIKDQKHLLK NIHRRKPIHS  120
HSHPPASTID QERATLQDQM DKLSREKAAI EAKLVKFKQQ RSTAKLQLEE MTEHVDGMEK  180
RQEKLLNFLE KAVRNPSFIE QFSRKIEQLD MSAYNKKRRI PQVEQSKPPS ENSHLDNSSG  240
SSRPDSGNIL HPNFSNKLRL ELSPAVSDMN MVSHSIQSSN EEGTSPKGIQ SGSDPKTALT  300
RRESLLFAPE ALELADTGSC PRRLLLNDNT RAEPLQQRLT SSEDTDGSFS CHLNLTLASA  360
PLPDKTTPQI PKTTHKSQDG GRCTELNFNS IETTTSEKNW GRQEAAAGNQ THVAPPDRVN  420
DVFWEQFLTE RPGSSDNEEA SSTYRGNPYE EQEERRNGHM MSRNTKNIEQ LTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	4e-21	17	115	17	129	Heat shock factor protein 1
5d5v_B	4e-21	17	115	17	129	Heat shock factor protein 1
5d5v_D	4e-21	17	115	17	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA87G00341

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010450121.1	0.0	PREDICTED: heat stress transcription factor A-5
Refseq	XP_010450142.1	0.0	PREDICTED: heat stress transcription factor A-5-like
Swissprot	Q94BZ5	0.0	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	R0GW90	0.0	R0GW90_9BRAS; Uncharacterized protein
STRING	XP_010450121.1	0.0	(Camelina sativa)
STRING	XP_010450142.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10134	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	0.0	HSF family protein

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]