PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA87G00209

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

FAR1

Protein Properties

Length: 820aa MW: 94806.6 Da PI: 7.2581

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA87G00209	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	90.4	2.4e-28	63	150	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e++++ ++r++++++t+Cka+++vk+++dgkw +++++++HnHel p AA87G00209 63 SFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESESS---NSRRSSVKKTDCKASMHVKRKSDGKWIIHEFVKDHNHELLP 150 5*************************************9998877...889999******************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.6E-26	63	150	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.0E-25	270	363	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.803	550	586	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.3E-5	552	584	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.9E-5	561	588	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010018	Biological Process	far-red light signaling pathway
GO:0042753	Biological Process	positive regulation of circadian rhythm
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 820 aa Download sequence Send to blast
MDSQEHQVSI GGDANMSVVV VESHNRDVGS VDDLRSGDLG FSGDLDLEPR NGIDFESHEA 60 AYSFYQEYAK SMGFTTSIKN SRRSKKTKEF IDAKFACSRY GVTPESESSN SRRSSVKKTD 120 CKASMHVKRK SDGKWIIHEF VKDHNHELLP ALAYHFRIQR NVKLAEKNNI DILHAVSERT 180 RKMYVEMSRQ SGGYKNLGLP QTDVNTQLDK NRYLALEEGD SQVIFEYFKR IKKESPKFFY 240 AVDLNEEQRL RNIFWADAKS REDYMSFNDV VSFDTTYVKF NDKLPLALFI GVNNHCQPML 300 LGCALVADES KETFIWLIKT WLRAMGGKAP KVILTDQDKL LMNAISELLP NTRHCFALWH 360 VLEKIPEYFS HVMKRHENFL PKFNKCIFRS WADDQFEMRW WKLISRFGLQ DDEWLLWLHE 420 HRQKWVPSFM SDVFLAGMST SQRSESMNSF FDKYIHKKIT LKEFLRQYGA ILQNRYEEES 480 VADFDTCHKQ PALKSPSPWE KQMATTYTHT IFKKFQVEVL GVVACHPRKE KEDGNIVTFR 540 VQDCEKDDEF LVTWSKTKSE LCCFCHMFEY KGFLCRHALM ILQICGFASI PPSYILKRWT 600 KDAKTGLVAS EEADQVQTRV QRYNDLCHRA IELSEEGCVS EENYNIVLRT LVESLKNCVD 660 LNNSRNCITE YSSQINGVHE EDNQVMAPVK ATKKKTVVRK RKGEPEVSQM LESQQSLQSM 720 ENLSSEGISI NGYYGPQQNV QGLLNLMEPP HEGYYVNQRT IQGLGQLNSI APVQDSFFAN 780 QQAMPGLGQI DFRPPPNFTY NLQDEHLRSA QLPGSSSRHL

Sequence ? help Back to Top

Protein Sequence Length: 820 aa Download sequence Send to blast

MDSQEHQVSI GGDANMSVVV VESHNRDVGS VDDLRSGDLG FSGDLDLEPR NGIDFESHEA  60
AYSFYQEYAK SMGFTTSIKN SRRSKKTKEF IDAKFACSRY GVTPESESSN SRRSSVKKTD  120
CKASMHVKRK SDGKWIIHEF VKDHNHELLP ALAYHFRIQR NVKLAEKNNI DILHAVSERT  180
RKMYVEMSRQ SGGYKNLGLP QTDVNTQLDK NRYLALEEGD SQVIFEYFKR IKKESPKFFY  240
AVDLNEEQRL RNIFWADAKS REDYMSFNDV VSFDTTYVKF NDKLPLALFI GVNNHCQPML  300
LGCALVADES KETFIWLIKT WLRAMGGKAP KVILTDQDKL LMNAISELLP NTRHCFALWH  360
VLEKIPEYFS HVMKRHENFL PKFNKCIFRS WADDQFEMRW WKLISRFGLQ DDEWLLWLHE  420
HRQKWVPSFM SDVFLAGMST SQRSESMNSF FDKYIHKKIT LKEFLRQYGA ILQNRYEEES  480
VADFDTCHKQ PALKSPSPWE KQMATTYTHT IFKKFQVEVL GVVACHPRKE KEDGNIVTFR  540
VQDCEKDDEF LVTWSKTKSE LCCFCHMFEY KGFLCRHALM ILQICGFASI PPSYILKRWT  600
KDAKTGLVAS EEADQVQTRV QRYNDLCHRA IELSEEGCVS EENYNIVLRT LVESLKNCVD  660
LNNSRNCITE YSSQINGVHE EDNQVMAPVK ATKKKTVVRK RKGEPEVSQM LESQQSLQSM  720
ENLSSEGISI NGYYGPQQNV QGLLNLMEPP HEGYYVNQRT IQGLGQLNSI APVQDSFFAN  780
QQAMPGLGQI DFRPPPNFTY NLQDEHLRSA QLPGSSSRHL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00434	DAP	Transfer from AT4G15090	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA87G00209

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006414566.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1
Swissprot	Q9SWG3	0.0	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A1J3JL92	0.0	A0A1J3JL92_NOCCA; Protein FAR-RED IMPAIRED RESPONSE 1
STRING	XP_006414566.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]