PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA87G00025
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family GRAS
Protein Properties Length: 422aa    MW: 46628.9 Da    PI: 5.6803
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA87G00025genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS377.22e-115574173374
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  lLl+cAe v+ ++l++a+ lL+++se++sp g++ +R++ayf++AL+arl +   +s++++ l  s+ +  +s++ +aal++++ vsP++kfsh+taN
  AA87G00025  57 GLLLQCAEYVAMDNLQEASILLSEISETCSPFGSSPERIVAYFAQALQARLISsyLSSSCASPLVESPITVVQSQKIFAALQTYNSVSPLIKFSHFTAN 155
                 58*************************************************9954467788888899999889999*********************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 qaI +a++ge+rvHiiD+d++qGlQWpaL++ LasRp++  s+RiTg+gs    s++ l +tg+rLa+fA++lg+pfef+++  k  + +++ +L ++p
  AA87G00025 156 QAIFQALDGEDRVHIIDLDVMQGLQWPALFHILASRPRKLRSVRITGFGS----SSNLLASTGRRLADFATSLGLPFEFHPIEGKIGNLIDPIQLGTRP 250
                 **************************************************....99*************************988888899********* PP

        GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                 +E+++V+++   hrl+d ++s  +    +++l+++l+P+++++veqe+++ +++sFl  f++al+yysalfd+l  +l++es er +vE+ +lg+ei+n
  AA87G00025 251 NETVVVHWMQ--HRLYDVTGSDFD----TIELLQKLKPRLITMVEQELSYsGGGSFLGSFVKALHYYSALFDALGGGLGEESGERYTVEELVLGKEIRN 343
                 *********9..****99999988....**********************999********************************************** PP

        GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 vva +g++r    +++e+Wre l+++GF+pv+l+ + a+qa lll + +++gy++ ee+g+l lgWkd +L+++SaW+
  AA87G00025 344 VVADAGRRR----REVERWREELSRVGFRPVSLRGNPATQAGLLLGMLPWNGYTLAEENGTLRLGWKDLSLLTASAWQ 417
                 *******83....44788***********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.72629397IPR005202Transcription factor GRAS
PfamPF035147.0E-11357417IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MNAKRLDRDF PPPADPSASK RRKDFDYNPN VHQDSDAALV VIQEADTGES TAIKLLGLLL  60
QCAEYVAMDN LQEASILLSE ISETCSPFGS SPERIVAYFA QALQARLISS YLSSSCASPL  120
VESPITVVQS QKIFAALQTY NSVSPLIKFS HFTANQAIFQ ALDGEDRVHI IDLDVMQGLQ  180
WPALFHILAS RPRKLRSVRI TGFGSSSNLL ASTGRRLADF ATSLGLPFEF HPIEGKIGNL  240
IDPIQLGTRP NETVVVHWMQ HRLYDVTGSD FDTIELLQKL KPRLITMVEQ ELSYSGGGSF  300
LGSFVKALHY YSALFDALGG GLGEESGERY TVEELVLGKE IRNVVADAGR RRREVERWRE  360
ELSRVGFRPV SLRGNPATQA GLLLGMLPWN GYTLAEENGT LRLGWKDLSL LTASAWQSQP  420
SD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-1446141624377Protein SCARECROW
5b3h_D1e-1446141624377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA87G00025
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_199007.10.0GRAS family transcription factor
RefseqXP_020875190.10.0scarecrow-like protein 23
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLD7MIP90.0D7MIP9_ARALL; Scarecrow transcription factor family protein
STRINGAT5G41920.10.0(Arabidopsis thaliana)
STRINGfgenesh2_kg.7__3225__AT5G41920.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125122631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]