PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA83G00020

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

G2-like

Protein Properties

Length: 330aa MW: 37634.9 Da PI: 6.939

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA83G00020	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.2	3.4e-32	189	243	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LHe+Fve+v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR+ AA83G00020 189 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRI 243 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.196	186	246	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-28	188	244	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.58E-17	188	243	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.6E-23	189	244	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-8	193	242	IPR001005	SANT/Myb domain
Pfam	PF14379	5.0E-20	273	320	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MDNINFTFSS QSRPLQTQPQ TQTLTQTQSY PLQDMNIVDY NQASPWSTEE PFSSYNPYDC 60 ASNQSFSIHC SSSKSYPSSF HSYHHQSSDP PPLNQAESMV SIQPLTDQYL KPFFQRSCAN 120 EFTTTTTPQS SSYSVSFEAS QASQGLCNSN VTQLNFSSIQ QDQPKQIHSR FCSPSFSTHG 180 GTTTPMGNKT RIRWTQDLHE KFVECVNRLG GADKATPKAI LKLMDSEGLT IFHVKSHLQK 240 YRIAKYIPDC QEGKFEKKGC VKELSQLDTK TGMQIKEALQ LQLDVQRHLH EQLEIQRNLQ 300 LKIEEQGKEL KKMIEQQQKA KESLNEETEH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-23	189	246	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-23	189	246	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-23	189	246	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-23	189	246	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-23	189	246	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-23	189	246	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-23	189	246	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-23	189	246	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA83G00020

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020878981.1	1e-160	myb family transcription factor PHL5
Swissprot	Q0WVU3	1e-155	PHL5_ARATH; Myb family transcription factor PHL5
TrEMBL	D7LZU1	1e-158	D7LZU1_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.6__627__AT5G06800.1	1e-159	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5476	27	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	1e-132	G2-like family protein