PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA82G00013
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 293aa    MW: 32852.3 Da    PI: 4.3142
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA82G00013genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.63.5e-161498195
                EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                ffk l     ++ + l +p  f+++h +g+  ++ t +l++  s  +Wevk+  ++++    l +GW++F+ a++L++gDfvvF+++g+++f  +v+
  AA82G00013 14 FFKPL--LPGFTDH-LDIPIAFFSKHiKGS-SNGNTAKLKSdASEITWEVKM--NGRR----LCDGWEDFAVAHDLRVGDFVVFRHEGEMTF--HVT 98
                56666..5566666.99*********8444.45669999986888*******..8887....999********************9998888..766 PP
2B367.12.4e-21150239594
                 -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
          B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                  +++++l++++  lpk+f++ +g +k++ k+++l +e+g+sW++ l+y+k sg+++++kGW++F++ang k+g +++F+l+++ ++++++v
  AA82G00013 150 HVTASNLARDIQALPKSFTTPNGVSKNC-KDVILINEEGKSWNLDLKYNKFSGEFYMSKGWRSFCEANGEKVGGSFTFELVQNgKRGTPLV 239
                 56889999999********999877766.7***************************************************9999999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.94E-219109IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-2211105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.74411103IPR003340B3 DNA binding domain
CDDcd100175.85E-2012100No hitNo description
SMARTSM010197.0E-2414103IPR003340B3 DNA binding domain
PfamPF023621.0E-102395IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-18142232IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-17145233IPR015300DNA-binding pseudobarrel domain
CDDcd100171.48E-16146232No hitNo description
PROSITE profilePS5086313.437146246IPR003340B3 DNA binding domain
SMARTSM010197.6E-18147246IPR003340B3 DNA binding domain
PfamPF023621.3E-18150239IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MADPPLHSPI TPHFFKPLLP GFTDHLDIPI AFFSKHIKGS SNGNTAKLKS DASEITWEVK  60
MNGRRLCDGW EDFAVAHDLR VGDFVVFRHE GEMTFHVTPF GPSCCEVQYA PFSANNNEDP  120
TDDARTETFS GDNNSSETNS LSDDSRFVSH VTASNLARDI QALPKSFTTP NGVSKNCKDV  180
ILINEEGKSW NLDLKYNKFS GEFYMSKGWR SFCEANGEKV GGSFTFELVQ NGKRGTPLVL  240
QLCLMGTANQ ENPAKEEIIE ETEQISESEE EHEENIEPMQ PLEEDVEEEE NIF
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA82G00013
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024014114.12e-98B3 domain-containing protein REM10
SwissprotP0DH855e-86REM10_ARATH; B3 domain-containing protein REM10
TrEMBLV4LRL32e-96V4LRL3_EUTSA; Uncharacterized protein
STRINGXP_006405016.13e-97(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.15e-88B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]