PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA82G00009
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 271aa    MW: 30675.3 Da    PI: 5.3442
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA82G00009genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.24.7e-161499195
                EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                ffk l     ++++ l +p +f+++h + +++++ t++l++  s  +Wevk+  +++++     +GW++F+ a++L++gD++vF+++g+++f  +v+
  AA82G00009 14 FFKPL--LPGFTNH-LDIPIEFFSKHiEVISNNDNTMKLKSdASDITWEVKM--NGQKQ----YDGWEDFAVAHDLRVGDILVFRHEGEMTF--HVT 99
                67777..6778887.************666677889999987888*******..77764....39********************9998888..766 PP
2B372.45.5e-23154243594
                 -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
          B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                  +++++l+++   lpk f+ ++g +k++ k+++l +e+g+sW++ l+y++ s+++ +++GW++F++ang+k+gD+++Fkl+++ ++++++v
  AA82G00009 154 HVTASNLSHDSRDLPKIFTISNGVSKNC-KDVILINEEGKSWNLDLKYKNFSDEFNMRRGWRSFCEANGIKAGDSLTFKLVENgKRGKPLV 243
                 57899999**************988766.7***************************************************9989999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.26E-2010106IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-2011106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.15211104IPR003340B3 DNA binding domain
CDDcd100173.36E-1712101No hitNo description
SMARTSM010191.8E-2114104IPR003340B3 DNA binding domain
PfamPF023625.7E-112296IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.3E-20144236IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-20145237IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.5E-21150250IPR003340B3 DNA binding domain
CDDcd100175.04E-17150236No hitNo description
PROSITE profilePS5086314.057150250IPR003340B3 DNA binding domain
PfamPF023621.7E-20154243IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MADPPLHSPI TPHFFKPLLP GFTNHLDIPI EFFSKHIEVI SNNDNTMKLK SDASDITWEV  60
KMNGQKQYDG WEDFAVAHDL RVGDILVFRH EGEMTFHVTP FGPSCCEVQY APFCANNNED  120
TTDDVKAETF SSNTSSSESN SLSDDSDHSR FVCHVTASNL SHDSRDLPKI FTISNGVSKN  180
CKDVILINEE GKSWNLDLKY KNFSDEFNMR RGWRSFCEAN GIKAGDSLTF KLVENGKRGK  240
PLVLQLCLLD CGNQDKMGKF LSFDFGKFFY N
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA82G00009
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024014114.11e-86B3 domain-containing protein REM10
SwissprotP0DH852e-79REM10_ARATH; B3 domain-containing protein REM10
TrEMBLV4LRL31e-85V4LRL3_EUTSA; Uncharacterized protein
STRINGXP_006405016.12e-86(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.17e-76B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]