PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA809G00001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | ERF | ||||||||
Protein Properties | Length: 264aa MW: 29444.8 Da PI: 7.8119 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.8 | 1.4e-18 | 23 | 73 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++ GVr+++ +g+WvAeI+d + ++ r +lg+f taeeAa+a+++a+ l+g AA809G00001 23 PKFVGVRQRP-SGKWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 73 799*******.7*********32...35**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.4E-13 | 23 | 73 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.04E-33 | 23 | 83 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.5E-28 | 24 | 82 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-19 | 24 | 81 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.823 | 24 | 81 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.0E-39 | 24 | 87 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-8 | 25 | 36 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-8 | 47 | 63 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000302 | Biological Process | response to reactive oxygen species | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0035865 | Biological Process | cellular response to potassium ion | ||||
GO:0048528 | Biological Process | post-embryonic root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MERQTTQKQK TKEKGRGSNN GKPKFVGVRQ RPSGKWVAEI KDTTQKIRMW LGTFETAEEA 60 ARAYDEAACL LRGSNTRTNF ANHFPNNSQL SLKIRNLLHQ KQSMKQQQKS VSFAERSINY 120 ACNATTSVTT TTTSNNTGIP TMVNHTHPLD DVYCPESTTT WVIGQPETCA IHLPCTWPFV 180 SGSTNHQTPP TGRGGEETQR DCTNQLHSPT DQQLGLADIE RHISASLYAM NGANSYDMST 240 DYAIFDPTDP IWDLPSLSQL FCPT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-15 | 15 | 90 | 5 | 81 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00521 | DAP | Transfer from AT5G19790 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA809G00001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002873964.2 | 1e-109 | ethylene-responsive transcription factor RAP2-11 | ||||
Swissprot | Q6J9S1 | 1e-106 | RA211_ARATH; Ethylene-responsive transcription factor RAP2-11 | ||||
TrEMBL | D7LZB8 | 1e-108 | D7LZB8_ARALL; Uncharacterized protein | ||||
STRING | scaffold_602074.1 | 1e-109 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7526 | 26 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 1e-86 | related to AP2 11 |
Publications ? help Back to Top | |||
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