PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA7G00144
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 339aa    MW: 36276.5 Da    PI: 8.07
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA7G00144genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.3e-11284329655
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +++Er RR ri  ++ +L++l+P+     +k  s +++L +Av++Ik Lq
  AA7G00144 284 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYSDMLDLAVQHIKGLQ 329
                689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.656278328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-13281335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.05E-11282333No hitNo description
Gene3DG3DSA:4.10.280.104.0E-11283334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-11284334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-8284329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MYQSSSSTSS SSQRSTVPGG GSGGLIRYGS APGSLLNSAI DAVIGGSNGR DFNASVNYPP  60
QDNFIGNFFT GSDSSSLRSD STACGVSSSD GHKELSNKNL LLDRSYGGFN EIPQNKSNDI  120
GNSSGSYSLA RQRSSPADFF SYLSGDKNSF SLNQPTSDYN QPGGSNGGRG QTRLNSQLSF  180
TSHDSLARIS EVNETAADNG SGHSFSAASF GAVTDSWDDG SGSIGFTVTR PSKRAKDIDS  240
GLYSQFSLPS DTSMNYMDNF MQLPEDAVPC KIRAKRGCAT HPRSIAERER RTRISGKLKK  300
LQDLVPNMDK QTSYSDMLDL AVQHIKGLQH QLQVQFPTK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA7G00144
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006417986.10.0transcription factor bHLH128
SwissprotQ8H1021e-176BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A1J3CWR70.0A0A1J3CWR7_NOCCA; Uncharacterized protein
STRINGXP_006417986.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117772631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.11e-156bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]