PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA7G00098
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C3H
Protein Properties Length: 370aa    MW: 40991.7 Da    PI: 8.026
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA7G00098genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.41.6e-10116139326
                S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                 e C+ f+r+G C +Gd C FaHg
  AA7G00098 116 GEVCPEFRRSGDCTRGDDCEFAHG 139
                689********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.488113141IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-6113143IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5113140IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-7114141IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-8117139IPR000571Zinc finger, CCCH-type
SMARTSM003562.5149172IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MDVACTEHHK TGLNRKPVIE IPPRKLISPV KQNWNLASKS EEEEDEEQSS GEKSKSKSYS  60
YDSDSDDPYA SDHFRMFEFK IRRCTRSRSH DWTDCPFAHP GEKARRRDPR KFQYSGEVCP  120
EFRRSGDCTR GDDCEFAHGV FECWLHPIRY RTEACKDGKH CKRKVCFFAH SPRQLRVLPP  180
ENNAGVASGG GGCNSGKQRC CLFCNSSSPT STLLGNLNLS HLSRSPSVSP PMSPANRAAA  240
FSRLRNRAAV TGSVNYKDVL SELVNSLDSI SLAEALQVSC SSPVTVTTPM STSASNHRNS  300
PLQFALSPST PNYLSTMSPS SMTSFFSEDF TPRRRQTSDF AAASMAVTAG SEKVGFECDP  360
DLGWVNDLLT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA7G00098
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_171875.11e-160Zinc finger C-x8-C-x5-C-x3-H type family protein
SwissprotQ9ZWA11e-161C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A178W4T91e-158A0A178W4T9_ARATH; TZF4
STRINGBostr.26675s0387.1.p1e-161(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29872766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.11e-128C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chang G, et al.
    AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana.
    Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238
    [PMID:29723526]