PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA7G00093
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C2H2
Protein Properties Length: 469aa    MW: 52448.8 Da    PI: 8.4345
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA7G00093genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-056486123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               + C+ Cgk F r  nL+ H r H
  AA7G00093 64 FICEVCGKGFQRDQNLQLHRRGH 86
               89*******************88 PP
2zf-C2H212.20.00056140162123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC++C k +  +s+ k H +t+
  AA7G00093 140 WKCEKCEKKYAVQSDWKAHSKTC 162
                58*****************9998 PP
3zf-C2H212.30.0005170188523
                TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                dCg++Fsr++++++H   +
  AA7G00093 170 DCGTVFSRRDSFVTHRAFC 188
                8**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.5E-56386IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.73E-76386No hitNo description
PROSITE profilePS5015711.5316486IPR007087Zinc finger, C2H2
SMARTSM003550.0196486IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
SMARTSM00355180105135IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.0E-4128161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.73E-7135160No hitNo description
SMARTSM00355150140160IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MSSSNGRYIQ TSSTLIDHVD HHHHDEQSFN PPLIKKKRNL PGNPDPEAEV IYLSPKTLMA  60
TNRFICEVCG KGFQRDQNLQ LHRRGHNLPW KLKQRANKEI KKRVYVCPEK SCVHNDPKRA  120
LGDLTGIKKH FCRKHGEKKW KCEKCEKKYA VQSDWKAHSK TCGTREYTCD CGTVFSRRDS  180
FVTHRAFCDA LAEETARLNA ASHLKSLAAA ASAVSAASAV SGNNLNYQYL MGTLIQQPSF  240
PFEQHHNRPH HFSISNAFDH QNAIKPESPL PLWMGNQNHH QLINEDPIQP PQPQTEDNFN  300
WIFENAENRR EILKSSSNTN ANATVISISV PSIFSNVDQI HTANAVSAIG DMSATALLQK  360
AAEMGSTTAT TEQSAFLNSV AFKISDQSII SEVGEDDSDK LFALFGSNSG FHEIGNSRNG  420
VLSVSEIREL QNYPLKRRRI ESGEGGQTRD FLGVGVQTMC RPSSINGWI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-35136203370Zinc finger protein JACKDAW
5b3h_F8e-35136203370Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1435439KRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00125DAPTransfer from AT1G03840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA7G00093
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010475014.10.0PREDICTED: zinc finger protein MAGPIE-like isoform X1
SwissprotQ9ZWA60.0IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A3P6GIA90.0A0A3P6GIA9_BRAOL; Uncharacterized protein
STRINGXP_010475014.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37102660
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.10.0C2H2 family protein
Publications ? help Back to Top
  1. Muñoz-Strale D,León G
    Identification of two highly specific pollen promoters using transcriptomic data.
    Plant Physiol. Biochem., 2014. 83: p. 292-9
    [PMID:25208507]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]