PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA79G00017

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

Nin-like

Protein Properties

Length: 918aa MW: 102431 Da PI: 7.1734

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA79G00017	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.9	1e-28	609	659	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i le+l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ AA79G00017 609 EKTIGLEVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 659 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.143	598	679	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-24	612	659	IPR003035	RWP-RK domain
SMART	SM00666	6.9E-28	819	902	IPR000270	PB1 domain
PROSITE profile	PS51745	28.639	819	902	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.4E-25	820	901	No hit	No description
SuperFamily	SSF54277	3.92E-23	820	904	No hit	No description
Pfam	PF00564	1.4E-18	821	901	IPR000270	PB1 domain
CDD	cd06407	7.06E-43	821	901	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 918 aa Download sequence Send to blast
MESGGGHGGN GGYLPNSTFG SFPETAMNLD FMEELFFDGC WLETTTDGKS LKQTPIQPIS 60 DSTINETNPY LYSYQFTENP SQNLKIEEIT NQTMNQEPYE QSPTMSSAQA EKFLLEESEV 120 ARRWWIAPRT SQGPSSSVKA RLVQAIKGLN EAVQDKDFLI QIWVPFQQEG KNFLTTLEQP 180 HFFNPKYSSL KRYRDVSVAY NFLADEDSKE SVGLPGRVFL GKLPEWTPDV RFFRSDEYPR 240 IKEAQKCDVR GSLALPVFER GSGTCLGVVE IVTTTQKMNY RPELENICKA LEVYNELYYA 300 ALPEISQFLT SVCRSHNLPL ALTWAQCARL GKGGSRHSNE NFSECVSTVD SACFVLDEQS 360 RNFLEACSEH HLLQGEGIVG KAFKAIKLFF VPEVTSFSKT NYPLAHHAKI SGLHAALAVP 420 LKSKFNGLVE FVLEFFFPKT CLDTESQQEM LKSLSVTLHQ DFRSLNLVID KEVELEVVFP 480 VRDELVFSQN QVRSGQGLNK LKPLPVTEIS QEDSSWISHM IKANEKGKGV SLSWEYQKEE 540 PKEEFMLTSG WDNHQIDPNH NNFLPGTDQF QKSSGHRHGI DPSFGSVPFG LGQTLGSRRT 600 GEKRRTKTEK TIGLEVLRQY FAGSLKDAAK SIGVCPTTLK RICRQHGITR WPSRKIKKVG 660 HSLKKLQLVI DSVQGVQGSI QLDSFYTSFP ELSSPNMSGT GTSTGPGSVP GPSFKKIENG 720 ISIQGTGAPR SPSSSCSHSS GSSTCCSTGA NQSSNTATTS NTTTTLMAED TITILKRARS 780 EMKLHTSNQE DTKSISRTFS HKTFSEHPLQ SNRRSFKTGS KVKATFGEAK VRFTLQPNWG 840 FRELQQEIAR RFNIENIASF DLKYLDDDKE WVLLTCEADL EECIDIYRSS QTRTIKISVH 900 EGCQGKIGGS FGSIGPCL

Sequence ? help Back to Top

Protein Sequence Length: 918 aa Download sequence Send to blast

MESGGGHGGN GGYLPNSTFG SFPETAMNLD FMEELFFDGC WLETTTDGKS LKQTPIQPIS  60
DSTINETNPY LYSYQFTENP SQNLKIEEIT NQTMNQEPYE QSPTMSSAQA EKFLLEESEV  120
ARRWWIAPRT SQGPSSSVKA RLVQAIKGLN EAVQDKDFLI QIWVPFQQEG KNFLTTLEQP  180
HFFNPKYSSL KRYRDVSVAY NFLADEDSKE SVGLPGRVFL GKLPEWTPDV RFFRSDEYPR  240
IKEAQKCDVR GSLALPVFER GSGTCLGVVE IVTTTQKMNY RPELENICKA LEVYNELYYA  300
ALPEISQFLT SVCRSHNLPL ALTWAQCARL GKGGSRHSNE NFSECVSTVD SACFVLDEQS  360
RNFLEACSEH HLLQGEGIVG KAFKAIKLFF VPEVTSFSKT NYPLAHHAKI SGLHAALAVP  420
LKSKFNGLVE FVLEFFFPKT CLDTESQQEM LKSLSVTLHQ DFRSLNLVID KEVELEVVFP  480
VRDELVFSQN QVRSGQGLNK LKPLPVTEIS QEDSSWISHM IKANEKGKGV SLSWEYQKEE  540
PKEEFMLTSG WDNHQIDPNH NNFLPGTDQF QKSSGHRHGI DPSFGSVPFG LGQTLGSRRT  600
GEKRRTKTEK TIGLEVLRQY FAGSLKDAAK SIGVCPTTLK RICRQHGITR WPSRKIKKVG  660
HSLKKLQLVI DSVQGVQGSI QLDSFYTSFP ELSSPNMSGT GTSTGPGSVP GPSFKKIENG  720
ISIQGTGAPR SPSSSCSHSS GSSTCCSTGA NQSSNTATTS NTTTTLMAED TITILKRARS  780
EMKLHTSNQE DTKSISRTFS HKTFSEHPLQ SNRRSFKTGS KVKATFGEAK VRFTLQPNWG  840
FRELQQEIAR RFNIENIASF DLKYLDDDKE WVLLTCEADL EECIDIYRSS QTRTIKISVH  900
EGCQGKIGGS FGSIGPCL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA79G00017

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006412126.1	0.0	protein NLP2
Swissprot	Q7X9B9	0.0	NLP2_ARATH; Protein NLP2
TrEMBL	V4MB36	0.0	V4MB36_EUTSA; Uncharacterized protein
STRING	Bostr.7867s1388.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1998	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein