PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA77G00031
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 345aa    MW: 38873 Da    PI: 4.367
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA77G00031genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31e-19116165255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +++GVr+++ +g+W+AeIrdp +   r+r++lg+f taeeAa  +++a+ +l+g
  AA77G00031 116 KFRGVRQRP-WGKWAAEIRDPDQ---RRRIWLGTFETAEEAAVVYDNAAIRLRG 165
                 89*******.**********854...6*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.0E-30115173IPR001471AP2/ERF domain
CDDcd000187.76E-34116172No hitNo description
SMARTSM003803.6E-39116179IPR001471AP2/ERF domain
PROSITE profilePS5103223.683116173IPR001471AP2/ERF domain
PfamPF008473.1E-12116165IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-21116174IPR016177DNA-binding domain
PRINTSPR003672.5E-10117128IPR001471AP2/ERF domain
PRINTSPR003672.5E-10139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MEDFMDFRPL KFTEHKTSVT KYTNKSDSSK PDSSIKLLRV SVTDPYATDS SSDEEDEVFL  60
FPRRRVKRFI NEIKVEPGSA VRKRVPTAIN VESESRNKQS LRVSSSSISS GQKGRKFRGV  120
RQRPWGKWAA EIRDPDQRRR IWLGTFETAE EAAVVYDNAA IRLRGPDALT NFSITPEISI  180
SKSKSESEPE PEPVYTKPEI NISSSSTTSE STDDLFQRIS SPTSVLNLPL QVDKPEKSVI  240
KSEFNTPWCV SGESSSTDDS FPLDTPFLDN FFNESPPEMS IFDETICEGN DIFGDLFIGE  300
GFSDDLVTEN ISCSNIKDIG SMFNDFDDSL ISDLLDGEYE SEMKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-23113174264ATERF1
3gcc_A2e-23113174264ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA77G00031
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018468106.11e-122PREDICTED: ethylene-responsive transcription factor CRF3-like
SwissprotQ9SUE31e-103CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A398A9461e-121A0A398A946_BRACM; Uncharacterized protein
STRINGBra022643.1-P1e-121(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22292576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.11e-89cytokinin response factor 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]