PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA76G00025
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MYB_related
Protein Properties Length: 459aa    MW: 54189.6 Da    PI: 4.487
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA76G00025genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.22.6e-1095140247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++W+ +E+ +++ + +++ +g+W+ I+r+   +Rt+ q+ s+ qky
       AA76G00025  95 NPWSVDEHRRFLIGLEKYSKGDWRGISRHEVVTRTPSQVASHAQKY 140
                      58*****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512936.985152IPR017884SANT domain
SMARTSM007174.6E-4253IPR001005SANT/Myb domain
SuperFamilySSF466892.17E-7459IPR009057Homeodomain-like
CDDcd001670.00132650No hitNo description
PROSITE profilePS5129415.72389145IPR017930Myb domain
SuperFamilySSF466891.27E-1390145IPR009057Homeodomain-like
SMARTSM007172.0E-693143IPR001005SANT/Myb domain
PfamPF002497.4E-895140IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.2E-1295144IPR006447Myb domain, plants
CDDcd001671.25E-696141No hitNo description
Gene3DG3DSA:1.10.10.608.0E-896140IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MAAKQWTKEE EKMFEQSLAI YTEQSPDQFE KIALFINKPV DEVQEHYDTL SRDLLMIESG  60
LLVEPVNMYI PTASTSTNPI SLDSKQGDNK RKRVNPWSVD EHRRFLIGLE KYSKGDWRGI  120
SRHEVVTRTP SQVASHAQKY FERQKLERNE RKRSSIHDIT LTSIEDTPPN IDPTGQQETP  180
IPPQPQLYPQ SVNSSGQQEI PIPLRLQPWQ QQDTPISLES QQWQQSQQWP QSEPYKQPVN  240
YEPQEAPLSP ESQQWQQPEP YQQFVNSQLQ KTPFFPESQQ WQQPQLYQQH VNSTSQQETL  300
LPLQLQQWQL PYRRQQPLNS IGQQETLISP ESQQWQQSQQ WQQLQAWQQQ EQYQQHVNSE  360
PQETLISPES QQWQQPESYR QFVNSESHET LISPESQQWQ QFQTWQQPEP CQQFVNSEPE  420
ETPIPPPQTW QQLHPYQQSV NTNGQEETLI PPQPPWPQP
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA76G00025
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51272750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.13e-56MYB family protein