PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA76G00024
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MYB_related
Protein Properties Length: 378aa    MW: 44397.1 Da    PI: 4.7024
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA76G00024genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.35.5e-1198142347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W+ +E+ +++ + +++G g+W+ I+r+   +Rt+ q+ s+ qky
       AA76G00024  98 SWSVDEHIRFLIGLEKYGQGDWRGISRHEVVTRTPSQVASHAQKY 142
                      7*****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.155155IPR017884SANT domain
SMARTSM007171.1E-4253IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-8459IPR009057Homeodomain-like
CDDcd001673.17E-4650No hitNo description
Gene3DG3DSA:1.10.10.602.3E-889146IPR009057Homeodomain-like
PROSITE profilePS5129416.97491147IPR017930Myb domain
SuperFamilySSF466895.68E-1392147IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-1394146IPR006447Myb domain, plants
SMARTSM007173.0E-795145IPR001005SANT/Myb domain
PfamPF002496.8E-997142IPR001005SANT/Myb domain
CDDcd001675.09E-798143No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MAAKQWTKEE EKMFEQSLAI YTEQSPDQFE KIALFINKPV DEVKEHYNVL ARDLLMIESG  60
LFIQPVNMYI PTATAPVSTN PISLGSQQGD NKRKRANSWS VDEHIRFLIG LEKYGQGDWR  120
GISRHEVVTR TPSQVASHAQ KYFERKKLEK SERKRSSIHD ITLATPPNTD STRQQETPIP  180
MQSQLYPQSV NSTGQQEIPI PLQSQPWQQP NQCQQLVNSI GQQDTPISLQ SQQWQQSQQW  240
EKSQQWQQFV NSEPHQTPIS LESQQWQQSQ QWEQSQQLEP YKQPQEAPLS PELQQWQQFQ  300
TWQQPEPYQQ FVSSEPEETP IPPESQQWQQ FETWKQRESY QQPVNFEPIL PQTQPWQQTQ  360
PYQQYVNSNG QEETLILP
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA76G00024
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013622270.14e-56PREDICTED: transcription factor DIVARICATA-like
TrEMBLA0A0D3AZR18e-55A0A0D3AZR1_BRAOL; Uncharacterized protein
STRINGBo3g002960.11e-55(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51272750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.14e-49MYB family protein