PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA6G00277
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family WRKY
Protein Properties Length: 463aa    MW: 50787 Da    PI: 6.7822
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA6G00277genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY986e-31264322259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  AA6G00277 264 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRSILITTYEGNHNHP 322
                7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-33248324IPR003657WRKY domain
SuperFamilySSF1182904.71E-28256324IPR003657WRKY domain
PROSITE profilePS5081129.677258324IPR003657WRKY domain
SMARTSM007743.7E-37263323IPR003657WRKY domain
PfamPF031066.9E-27265322IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MFRFPASLGG PRGDLLASSS PLDEEQQHRM VVDEVDFFSS EKIRDNSSNV VVVDEARVHV  60
KLESNSSRVE NRCNDVNIGL HLANTGSDES TVDDGMSSMD MDEKRTNCEL KVEIKKIKEE  120
NENLKNRLTH VTNNCTTLQM QIFTLIKQQE EDHHHLDKAK KLHEPPATMV PRQFIDLGPS  180
SGEVSSEERT TVRSGSPSSL LETGKRLLGR EESANNESNE WRNPNNVPKH NLSSSNVIDQ  240
SAAEATMRKA RVSVRARSEA PMISDGCQWR KYGQKMAKGN PCPRAYYRCT MAVGCPVRKQ  300
VQRCAEDRSI LITTYEGNHN HPLPPAAMTM ASTTTAAASM LLSGSTMSSN QDGLINQTNL  360
LARAILPCSS TMATISASAP FPTITLDLTN PSNGHNLTNN NNNNNNPLMQ LSQRPEMMAQ  420
AAMYCNQNMS KVAGLQIPSQ VSESIASNPN FASALAAAIT SII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-23250326176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00428DAPTransfer from AT4G04450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA6G00277
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010432828.10.0PREDICTED: WRKY transcription factor 42-like
SwissprotQ9XEC30.0WRK42_ARATH; WRKY transcription factor 42
TrEMBLR0FDY10.0R0FDY1_9BRAS; Uncharacterized protein
STRINGXP_010432828.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105728107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.11e-152WRKY family protein