PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA6G00252
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HD-ZIP
Protein Properties Length: 767aa    MW: 84365.3 Da    PI: 5.6489
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA6G00252genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox43.55.4e-1464130156
                TT--SS--HHHHHHHHHH...........HHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   1 rrkRttftkeqleeLeel...........FeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                +++ +++t+ q++eLe++           F+++++p+ ++r+eL++ l+L+  qVk+WFqN+R+++k
  AA6G00252  64 KKRYHRHTQRQIQELESYifkhklnfktfFKECPHPDDKQRKELSRDLNLEPLQVKFWFQNKRTQMK 130
                56777888888888886542222232222669********************************998 PP
2START219.88.8e-692674861206
                HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT CS
      START   1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg 88 
                ela +a++elv++a+++ep+W +     e++n++e+ ++f+++ +      ++ea+r+s+vv+m++ +lve+l+d++ qW+  +     +a tlev+s+g
  AA6G00252 267 ELAVAAMEELVRMAQSGEPLWISTEnsvEILNEEEYFRTFPRGIGpkplgLRSEASRESAVVIMNHINLVEILMDVN-QWSSVFSgivsRALTLEVLSTG 365
                57899******************99999**************999********************************.********************** PP

                ......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS
      START  89 ......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181
                      galq+m+ae+q++splvp R+ +fvRy++q+++g+w++vdvS+ds ++ p    + R +++pSg++i++++ng+skvtwveh+++++r++h+++
  AA6G00252 366 vagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHSDGSWAVVDVSLDSLRPSP----ISRTRRRPSGCMIQELPNGYSKVTWVEHMEVDDRSVHNMY 461
                ******************************************************99....69999*********************************** PP

                HHHHHHHHHHHHHHHHHHTXXXXXX CS
      START 182 rslvksglaegaktwvatlqrqcek 206
                ++lv+sgla+gak+wvatl+rqce+
  AA6G00252 462 KPLVNSGLAFGAKRWVATLDRQCER 486
                ***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.7E-2145130IPR009057Homeodomain-like
SuperFamilySSF466893.47E-1453132IPR009057Homeodomain-like
PROSITE profilePS5007113.99361132IPR001356Homeobox domain
SMARTSM003896.1E-1262136IPR001356Homeobox domain
CDDcd000862.38E-1564133No hitNo description
PfamPF000461.6E-1164130IPR001356Homeobox domain
PROSITE patternPS000270107130IPR017970Homeobox, conserved site
PROSITE profilePS5084846.191258489IPR002913START domain
SuperFamilySSF559612.2E-36260488No hitNo description
CDDcd088754.71E-128262485No hitNo description
SMARTSM002342.7E-76267486IPR002913START domain
PfamPF018521.0E-57268486IPR002913START domain
Gene3DG3DSA:3.30.530.207.6E-7365486IPR023393START-like domain
SuperFamilySSF559614.62E-21506763No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 767 aa     Download sequence    Send to blast
MYHPNMFESH HMFEMTPKST SDNELGMTGS REDDFETKSG TEVTTENPNG EEELQDPNQR  60
PNKKKRYHRH TQRQIQELES YIFKHKLNFK TFFKECPHPD DKQRKELSRD LNLEPLQVKF  120
WFQNKRTQMK AQHERHENQI LKSDNDKLRA ENNRYKEALN NATCPNCGGP AAIGEMSFDE  180
QHLRIENARL REEIDRISSI AAKYVGKPLA SSFTPLAVHA PTRSLDLEVG NFGNQTSTGF  240
VGEMYGSGDI LRSVSIHSET DKPMIVELAV AAMEELVRMA QSGEPLWIST ENSVEILNEE  300
EYFRTFPRGI GPKPLGLRSE ASRESAVVIM NHINLVEILM DVNQWSSVFS GIVSRALTLE  360
VLSTGVAGNY NGALQVMTAE FQVPSPLVPT RENYFVRYCK QHSDGSWAVV DVSLDSLRPS  420
PISRTRRRPS GCMIQELPNG YSKVTWVEHM EVDDRSVHNM YKPLVNSGLA FGAKRWVATL  480
DRQCERLASS MASNIPAGDL SVITSPEGRK SMLKLAERMV MSFCSGVGAS TAHAWTTLSA  540
TGSDDVRVMT RKSMDDPGRP PGIVLSAATS FWIPVAPKRV FDFLRDENSR SEVTILASIL  600
GFNVVEWDIL SNGGMVQEMA HIANGRDPGN CVSLLRVNSG NSSQSNMLIL QESCTDESGS  660
YVIYAPVDIV AMNVVLSGGD PDYVALLPSG FAILSDGSVG DGGGEGGDGN QEVVAAAAAS  720
GACGSLLTVA FQILVDSVPT AKLSLGSVAT VNSLIKCTVE RIKAAVV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA6G00252
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018472664.10.0PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2
RefseqXP_018472665.10.0PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLA0A3P6A9L90.0A0A3P6A9L9_BRACM; Uncharacterized protein
STRINGAT4G04890.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49128149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]