PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA6G00231 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | MYB | ||||||||
Protein Properties | Length: 277aa MW: 32675.2 Da PI: 6.7364 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.2 | 4.4e-19 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+++++++G g+W+t ++ g+ R++k+c++rw +yl AA6G00231 15 KGPWTPEEDQKLIEYIHEHGYGNWRTLPKNAGLQRCGKSCRLRWTNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.8 | 2.2e-17 | 68 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W++Ia +++ gRt++++k++w+++ AA6G00231 68 RGRFSFEEEETIIQLHSILGNK-WSAIATRLP-GRTDNEIKNYWNTH 112 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.357 | 10 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.28E-31 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-14 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-17 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-25 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.48E-12 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 20.561 | 67 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 2.8E-16 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 68 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.60E-11 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-26 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MGRPPCHEKK NDLKKGPWTP EEDQKLIEYI HEHGYGNWRT LPKNAGLQRC GKSCRLRWTN 60 YLRPDIKRGR FSFEEEETII QLHSILGNKW SAIATRLPGR TDNEIKNYWN THIRKRLLKM 120 GIDPITHNPR LDLLDLSSIF NSSHHQQTLL NQEILKLATS LFSNSQHLQN QTRVNQYQTN 180 QELQSWFPLF PNQTNINRFA EFEDISYQNM STTVQDYSSS TPLNSSSTTY VNSSSCSINE 240 DEKESYCSNN YMNFDIHDYS FDVNEFLQFQ ETQNHWE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-30 | 12 | 117 | 4 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in salt stress response. {ECO:0000305|PubMed:26139822}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA6G00231 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:26139822}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006288136.1 | 1e-137 | transcription factor MYB74 | ||||
Swissprot | Q9M0Y5 | 1e-115 | MYB74_ARATH; Transcription factor MYB74 | ||||
TrEMBL | R0GVX2 | 1e-136 | R0GVX2_9BRAS; Uncharacterized protein | ||||
STRING | XP_006288136.1 | 1e-136 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G05100.1 | 1e-112 | myb domain protein 74 |
Publications ? help Back to Top | |||
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