PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA6G00231
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MYB
Protein Properties Length: 277aa    MW: 32675.2 Da    PI: 6.7364
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA6G00231genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.24.4e-191562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+++++++G g+W+t ++  g+ R++k+c++rw +yl
        AA6G00231 15 KGPWTPEEDQKLIEYIHEHGYGNWRTLPKNAGLQRCGKSCRLRWTNYL 62
                     79********************************************97 PP

2Myb_DNA-binding54.82.2e-1768112147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr++ eE+e +++++  lG++ W++Ia +++ gRt++++k++w+++
        AA6G00231  68 RGRFSFEEEETIIQLHSILGNK-WSAIATRLP-GRTDNEIKNYWNTH 112
                      89********************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.3571066IPR017930Myb domain
SuperFamilySSF466891.28E-3112109IPR009057Homeodomain-like
SMARTSM007172.7E-141464IPR001005SANT/Myb domain
PfamPF002491.0E-171562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-251669IPR009057Homeodomain-like
CDDcd001676.48E-121762No hitNo description
PROSITE profilePS5129420.56167117IPR017930Myb domain
SMARTSM007172.8E-1667115IPR001005SANT/Myb domain
PfamPF002491.1E-1568112IPR001005SANT/Myb domain
CDDcd001679.60E-1170113No hitNo description
Gene3DG3DSA:1.10.10.603.2E-2670117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MGRPPCHEKK NDLKKGPWTP EEDQKLIEYI HEHGYGNWRT LPKNAGLQRC GKSCRLRWTN  60
YLRPDIKRGR FSFEEEETII QLHSILGNKW SAIATRLPGR TDNEIKNYWN THIRKRLLKM  120
GIDPITHNPR LDLLDLSSIF NSSHHQQTLL NQEILKLATS LFSNSQHLQN QTRVNQYQTN  180
QELQSWFPLF PNQTNINRFA EFEDISYQNM STTVQDYSSS TPLNSSSTTY VNSSSCSINE  240
DEKESYCSNN YMNFDIHDYS FDVNEFLQFQ ETQNHWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30121174108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in salt stress response. {ECO:0000305|PubMed:26139822}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA6G00231
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:26139822}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288136.11e-137transcription factor MYB74
SwissprotQ9M0Y51e-115MYB74_ARATH; Transcription factor MYB74
TrEMBLR0GVX21e-136R0GVX2_9BRAS; Uncharacterized protein
STRINGXP_006288136.11e-136(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G05100.11e-112myb domain protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xu R, et al.
    Salt-induced transcription factor MYB74 is regulated by the RNA-directed DNA methylation pathway in Arabidopsis.
    J. Exp. Bot., 2015. 66(19): p. 5997-6008
    [PMID:26139822]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]