PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA68G00018
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family GeBP
Protein Properties Length: 330aa    MW: 37405 Da    PI: 4.8798
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA68G00018genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573102.34e-3263153797
      DUF573   7 wseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                 w+e+De+++L+Gl+d+++ktg +p++++d+f+ f+++si++kvsk+ql++Kir+LKk f  +++k+ +g++p f+++ d+++f++s++iWg
  AA68G00018  63 WNEDDELAILKGLLDYRSKTGLNPQSNWDEFFCFLRGSIHLKVSKEQLLSKIRKLKKLFLVNMEKIGKGDDPLFTRSTDSEAFGFSMMIWG 153
                 ******************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.5E-2562153IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MATPKKLNLS FAGGDSEDEE ISSNSTDFLL LPRRKSLRTP SSKRPASNGA TVTAAEPLTR  60
WKWNEDDELA ILKGLLDYRS KTGLNPQSNW DEFFCFLRGS IHLKVSKEQL LSKIRKLKKL  120
FLVNMEKIGK GDDPLFTRST DSEAFGFSMM IWGRNDAEFG NGSIGETQSN ENDEDASKAE  180
EEVSNAEALN ENEVTKTYFD DKSSPEIVVD KIIENENVEK ESHYNDGDDL CALYDAFETM  240
LSEGVSDYQK KKYQEKLMNL GAGKRKELSY EWKALYVEEV KLNIKKLRFS SKLAQVDSSI  300
AITSLIGHMG KGLWTVEPER WLRVGRFMSD
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. May play redundant roles with GEBP and GPL1 in cytokinin responses by regulating the transcript levels of type-A ARR response genes. Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269|PubMed:21875893, ECO:0000305|PubMed:18162594}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00061PBMTransfer from AT4G00270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA68G00018
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020876219.12e-90GLABROUS1 enhancer-binding protein-like 2 isoform X1
RefseqXP_020876220.11e-90GLABROUS1 enhancer-binding protein-like 2 isoform X2
SwissprotP0DKL02e-77STKLT_ARATH; GLABROUS1 enhancer-binding protein-like 2
TrEMBLD7M6223e-85D7M622_ARALL; Predicted protein
STRINGAl_scaffold_0006_13294e-86(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61171741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00270.17e-77DNA-binding storekeeper protein-related transcriptional regulator