PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA683G00001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | MYB | ||||||||
Protein Properties | Length: 291aa MW: 31811.7 Da PI: 8.8512 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56 | 9e-18 | 13 | 57 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+W++eEde l+ v+ +G+++W+ I++ ++ gR++k+c++rw + AA683G00001 13 KGPWSQEEDEALKMWVQTYGPRNWSHISKSIP-GRSGKSCRLRWCN 57 79******************************.***********87 PP | |||||||
2 | Myb_DNA-binding | 53.2 | 6.7e-17 | 67 | 109 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++TteEd +++a++qlG++ W+tIar+++ gR ++ +k+rw++ AA683G00001 67 PFTTEEDNAIIRAHAQLGNK-WATIARMIN-GRIDNAIKNRWNST 109 89******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.323 | 8 | 59 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.03E-30 | 11 | 106 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.1E-16 | 12 | 61 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.8E-17 | 13 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-24 | 14 | 66 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.98E-15 | 15 | 57 | No hit | No description |
PROSITE profile | PS51294 | 23.487 | 60 | 114 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-13 | 64 | 112 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-14 | 67 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.23E-11 | 67 | 110 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.6E-22 | 67 | 113 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MTSSARRVSD QIKGPWSQEE DEALKMWVQT YGPRNWSHIS KSIPGRSGKS CRLRWCNQIS 60 PDVEHRPFTT EEDNAIIRAH AQLGNKWATI ARMINGRIDN AIKNRWNSTL KRKCTSMAVG 120 SDGPTVLSEF EQPLKRSASL GATNLLTGLS FHPSSSSGSE LSDYSLPGAS TSSVHRPVAR 180 IDSIVPASKH VGSVSDPTTL LSLSLPGLEP SDQAASGSES NQVSDPTSNV KVSKVMSLRQ 240 PDPPLLLPHA SSPFSSDNQF FNMEFLTVVQ EMIRKEVGNH VTGIYQKEVS L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-35 | 12 | 114 | 3 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 1e-34 | 12 | 113 | 57 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-34 | 12 | 113 | 57 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-35 | 12 | 114 | 3 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-35 | 12 | 114 | 3 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA683G00001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022772895.1 | 1e-106 | transcription factor MYB44-like | ||||
Swissprot | O23160 | 9e-75 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | A0A067KZQ6 | 1e-102 | A0A067KZQ6_JATCU; MYB family protein | ||||
STRING | XP_010556427.1 | 1e-104 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM677 | 28 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67300.1 | 2e-64 | myb domain protein r1 |
Publications ? help Back to Top | |||
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