PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA65G00360 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | RAV | ||||||||
Protein Properties | Length: 354aa MW: 39774.6 Da PI: 9.8029 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 40.6 | 6.3e-13 | 60 | 108 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAa+a++ a +++g AA65G00360 60 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDVAVHRFRG 108 89****9888.8*********3.....5**********99***********9998 PP | |||||||
2 | B3 | 98 | 6.1e-31 | 191 | 295 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+ tpsdv+k++rlv+pk++ae+h ++++ ++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+ +L +gD+v F++++ ++++l+ AA65G00360 191 FEKTVTPSDVGKLNRLVIPKHHAEKHfplpsnSNVSVKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKERNLTAGDVVSFSRSNGQDQQLY 289 99***************************99977777999*************************************************9877999999 PP EEEE-S CS B3 94 vkvfrk 99 +++ +k AA65G00360 290 IGWKSK 295 999776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.75E-26 | 60 | 118 | No hit | No description |
SuperFamily | SSF54171 | 2.55E-17 | 60 | 117 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.1E-8 | 60 | 108 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-27 | 61 | 122 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-20 | 61 | 117 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.192 | 61 | 116 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 7.9E-39 | 184 | 296 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.16E-31 | 188 | 293 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.35E-26 | 190 | 283 | No hit | No description |
Pfam | PF02362 | 5.7E-28 | 191 | 295 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-24 | 191 | 296 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.972 | 191 | 296 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009741 | Biological Process | response to brassinosteroid | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MDVSSVDEST TSTDSIYLTP AKIPAPVRPS MKLYRMGSGS SVVVDLENGV EAESRKLPSS 60 KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAARAYD VAVHRFRGRD AVTNFKDALI 120 SVDDDDSSVI DFLNSHSKSE IVDMLRKHTY NEELEQSKRR RNGKTMKTTT GTTSFLDNQN 180 DVVFRSAEIL FEKTVTPSDV GKLNRLVIPK HHAEKHFPLP SNSNVSVKGL LLNFEDVTGK 240 VWRFRYSYWN SSQSYVLTKG WSRFVKERNL TAGDVVSFSR SNGQDQQLYI GWKSKTGSGQ 300 DMNRVVKLFG VNICSSSGGC KNDVVVNGGG FKRVINNESL VCNNNKKQRI FYAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 3e-69 | 187 | 301 | 10 | 123 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00139 | DAP | Transfer from AT1G13260 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA65G00360 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006417140.1 | 0.0 | AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
Swissprot | Q9ZWM9 | 0.0 | RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
TrEMBL | V4L6Y3 | 0.0 | V4L6Y3_EUTSA; Uncharacterized protein | ||||
STRING | XP_006417140.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM848 | 27 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13260.1 | 1e-174 | related to ABI3/VP1 1 |
Publications ? help Back to Top | |||
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