PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA65G00318
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 269aa    MW: 29942.9 Da    PI: 5.8279
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA65G00318genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.82.3e-171968255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                +y GVr ++ +gr++AeIr ps+   + r++lg+f+taeeAa a++ a++++ g
  AA65G00318 19 KYLGVRKRP-WGRYAAEIRNPST---KERHWLGTFDTAEEAALAYDSAARSISG 68
                799******.**********965...5**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-171974IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-251974IPR001471AP2/ERF domain
PfamPF008478.2E-111967IPR001471AP2/ERF domain
SMARTSM003801.6E-291981IPR001471AP2/ERF domain
CDDcd000185.94E-271974No hitNo description
PROSITE profilePS5103219.3611979IPR001471AP2/ERF domain
PRINTSPR003671.1E-82031IPR001471AP2/ERF domain
PRINTSPR003671.1E-84258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MSTSGNKSKR KQEKSEEVKY LGVRKRPWGR YAAEIRNPST KERHWLGTFD TAEEAALAYD  60
SAARSISGSL ATNFIYNNNN NNNNISFQRQ QPQQLQSLNN DFVNPFMSLN SSASCFLKEQ  120
QIKSPDCVPN MSWGCSSFCL LQDQQLQPPE NHYLGHNLHW GSPVSSDLQE QQSATLINTL  180
SSHYNHDQIG REREFLLPSL PSNLSSTVFG HEINNGVQDS AEQITIASVP GEEAHYLQSS  240
LFCNNLSSLL NDVNGDAPQV IGSSSSPFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1715791076Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA65G00318
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006303870.11e-62ethylene-responsive transcription factor ERF088
RefseqXP_006417179.11e-62ethylene-responsive transcription factor ERF088
TrEMBLR0IIP73e-61R0IIP7_9BRAS; Uncharacterized protein
TrEMBLV4KZT43e-61V4KZT4_EUTSA; Uncharacterized protein
STRINGBostr.13671s0161.1.p2e-69(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12890.12e-42ERF family protein