PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA651G00001
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HD-ZIP
Protein Properties Length: 838aa    MW: 92640.8 Da    PI: 5.5566
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA651G00001genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.81.8e-181775357
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 k  ++t+eq+e+Le+l++ +++ps  +r++L + +    +++ +q+kvWFqNrR +ek+
  AA651G00001 17 KYVRYTPEQVEALERLYNDCPKPSSMRRQQLIRDCpilsNIEPKQIKVWFQNRRCREKQ 75
                 5679*****************************************************97 PP
2START189.81.3e-591613692205
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                  +a e+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++ g a+ra+g+v  +++  v+e+l+d+++W +++++ ++++v+s+   g+l+l++++
  AA651G00001 161 IADETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCAGIAARACGLVGLDPT-RVAEILKDRPCWLRDCRSLDIVNVLSTSngGTLELIYMQ 257
                  68899*****************************************************.8888888888***************98778********* PP

                  XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
        START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
                  l+a+++l+p Rdf+++Ry+  +++g++vi+++S++++q+ p+   s+++vRae lpSg+li+p+++g+s +++v+h+dl+ ++++++lrsl++s++  
  AA651G00001 258 LYAPTTLAPaRDFWMLRYTSVMEDGSLVICERSLNNTQNGPSmppSPNFVRAEILPSGYLIRPCEGGGSILHIVDHFDLEPWSVPEVLRSLYESSTLL 355
                  ****************************************99999***************************************************** PP

                  HHHHHHHHTXXXXX CS
        START 192 gaktwvatlqrqce 205
                  +++t++a+l+++++
  AA651G00001 356 AQRTTMAALRYLRQ 369
                  *********99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.3051276IPR001356Homeobox domain
SMARTSM003895.8E-151480IPR001356Homeobox domain
SuperFamilySSF466894.02E-161680IPR009057Homeodomain-like
CDDcd000866.41E-161777No hitNo description
PfamPF000465.1E-161875IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.5E-181975IPR009057Homeodomain-like
CDDcd146861.14E-669108No hitNo description
PROSITE profilePS5084826.907151379IPR002913START domain
CDDcd088751.66E-80155370No hitNo description
Gene3DG3DSA:3.30.530.201.3E-24159365IPR023393START-like domain
SuperFamilySSF559612.88E-38160371No hitNo description
SMARTSM002341.4E-41160370IPR002913START domain
PfamPF018523.4E-57161369IPR002913START domain
PfamPF086703.1E-46695837IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010067Biological Processprocambium histogenesis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0010089Biological Processxylem development
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    Send to blast
MGGGSNNSHN SNIDNGKYVR YTPEQVEALE RLYNDCPKPS SMRRQQLIRD CPILSNIEPK  60
QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN DRLQKQVSHL VYENSYFRQH  120
SQNGNLTTTD TSCESVVTSG QHQLTTSHQP RDASPAGLLS IADETLTEFL SKATGTAVEW  180
VQMPGMKPGP DSIGIVAISH GCAGIAARAC GLVGLDPTRV AEILKDRPCW LRDCRSLDIV  240
NVLSTSNGGT LELIYMQLYA PTTLAPARDF WMLRYTSVME DGSLVICERS LNNTQNGPSM  300
PPSPNFVRAE ILPSGYLIRP CEGGGSILHI VDHFDLEPWS VPEVLRSLYE SSTLLAQRTT  360
MAALRYLRQI SQEISQPNVT GWGRRPAALR ALSQRLSKGF NEAVNGFSDE GWTMLESDGI  420
DDVTLLVNTS PTKMMMTSNL PFSNGFTSMP SAVLCAKASM LLQNVPPSIL LRFLREHRQE  480
WADNSIDAYS AAAIKAGPCN LPIPRPGSFG GQVILPLAHT IENEEFMEVI KLESLGHYQE  540
DIMMPADIFL LQMCSGVDEN AVESCAELIF APIDASFSDD APIIPSGFRI IPLDSKPEGV  600
SPNRTLDLAS ALDIGAPGNR TTGESCGNNT KSSKSVMTIA FQLAYELHLQ DNVASMARQY  660
VRNVIASVQR VALALSPSSQ FGGLRPPPAS PEAHTLSRWI NNSYRCFLGV ELLKPQLGND  720
QNLLKSLWNH QDALLCCSLK PLQVFTFANQ AGLDMLETTL VALQDVSLEK IFEEDGNKRL  780
CSELSQVMQQ GFMCVEGGMC LSSMGRAVTF DKVVAWKVLN DEEDPHCICF MFLNWSFL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA651G00001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412418.10.0homeobox-leucine zipper protein ATHB-8 isoform X2
SwissprotQ391230.0ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBLV4P3880.0V4P388_EUTSA; Uncharacterized protein
STRINGXP_006412419.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20222678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0homeobox gene 8
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
    Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
    Planta, 2014. 239(5): p. 989-1001
    [PMID:24488524]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Kakehi J, et al.
    Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
    PLoS ONE, 2015. 10(1): p. e0117309
    [PMID:25625317]
  5. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  6. Liu S, et al.
    Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 388
    [PMID:26082787]
  7. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]
  8. Yamazaki K, et al.
    Suppression of DELLA signaling induces procambial cell formation in culture.
    Plant J., 2018. 94(1): p. 48-59
    [PMID:29383774]