PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA643G00001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | MYB | ||||||||
Protein Properties | Length: 243aa MW: 28227.7 Da PI: 8.9149 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.9 | 3.5e-16 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT Ed++l d++ +G g W+t ++ g++R++k+c++rw +yl AA643G00001 15 RGAWTDHEDKILRDYILTHGEGKWSTLPNQAGLKRCGKSCRLRWKNYL 62 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.2 | 3.3e-17 | 68 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ +++E+el+++++++lG++ W++Ia +++ gRt++++k++w++ AA643G00001 68 RGNISPDEEELIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNHWNSN 112 7899******************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.658 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.4E-28 | 13 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.0E-12 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-13 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-22 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.73E-8 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 25.416 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 3.3E-16 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-15 | 68 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-24 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.50E-10 | 72 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006633 | Biological Process | fatty acid biosynthetic process | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0010023 | Biological Process | proanthocyanidin biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MGRRTSNVKR EELNRGAWTD HEDKILRDYI LTHGEGKWST LPNQAGLKRC GKSCRLRWKN 60 YLRPGIKRGN ISPDEEELII RLHNLLGNRW SLIAGRLPGR TDNEIKNHWN SNLRKRLLNN 120 KNKNKNSVCA IRTKAVRGSK AILFSDLPNE KETTNPLRLQ FHKPEETIAV NDGSSLLGDL 180 EFDFDRIQIF PELMDFDGLT CGNVTSDEFL GDWNSSQENL DLNRPFASYL QRDDENWLRD 240 FSY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-26 | 4 | 117 | 16 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA643G00001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_198405.1 | 1e-118 | Duplicated homeodomain-like superfamily protein | ||||
Swissprot | Q9FJA2 | 1e-119 | TT2_ARATH; Transcription factor TT2 | ||||
TrEMBL | A0A178UCY6 | 1e-117 | A0A178UCY6_ARATH; TT2 | ||||
STRING | AT5G35550.1 | 1e-118 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 1e-112 | MYB family protein |