PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA63G00034 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | LBD | ||||||||
Protein Properties | Length: 159aa MW: 17662.2 Da PI: 7.0961 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128.5 | 3.1e-40 | 11 | 110 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+l+r+C++ C++apyf a++p +fa vhk+FGasnv+kll+++pee+r+++++sl+yeAe+r++dPvyG++g+i +lq+++ +l+++la++++ AA63G00034 11 SCAACKLLKRRCTPTCIFAPYFRANDPITFAKVHKVFGASNVSKLLSEVPEEQRQETVNSLAYEAEVRLKDPVYGCIGTIASLQKKMLELQHDLAVARS 109 6**********************************************************************************************9987 PP DUF260 100 e 100 + AA63G00034 110 R 110 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.038 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-39 | 11 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MRGHEPRSSS SCAACKLLKR RCTPTCIFAP YFRANDPITF AKVHKVFGAS NVSKLLSEVP 60 EEQRQETVNS LAYEAEVRLK DPVYGCIGTI ASLQKKMLEL QHDLAVARSR LAHSGVNNHH 120 VSALDDSAVL DLVPYSDLMF LDGFSLDAYL YDFGQPPFV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-41 | 6 | 111 | 6 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-41 | 6 | 111 | 6 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA63G00034 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006407473.1 | 1e-100 | LOB domain-containing protein 21 | ||||
Swissprot | Q9SRL8 | 1e-99 | LBD21_ARATH; LOB domain-containing protein 21 | ||||
TrEMBL | A0A087H8P0 | 1e-100 | A0A087H8P0_ARAAL; Uncharacterized protein | ||||
STRING | A0A087H8P0 | 1e-101 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10255 | 27 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11090.1 | 1e-102 | LOB domain-containing protein 21 |
Publications ? help Back to Top | |||
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